Mercurial > repos > bgruening > deeptools_bam_pe_fragmentsize

diff bamPEFragmentSize.xml @ 3:6da6f2908463 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c
author bgruening
date Wed, 09 Mar 2016 17:49:50 -0500
parents 011ea45dda07
children a14f74993305
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line diff
--- a/bamPEFragmentSize.xml	Thu Feb 18 11:42:40 2016 -0500
+++ b/bamPEFragmentSize.xml	Wed Mar 09 17:49:50 2016 -0500
@@ -26,7 +26,7 @@
     </command>
     <inputs>
         <param name="bamInput" format="bam" type="data" label="BAM file"
-            help="The BAM file must be sorted."/>
+            help=""/>
         <param argument="--histogram" type="boolean" truevalue="--histogram" falsevalue=""
             label="Get the distribution of fragment lengths as a histogram"
             help=""/>
@@ -66,13 +66,13 @@
 <![CDATA[
 
 What it does
----------------
+------------
 
 This tool samples a BAM file with paired-end data to estimate the fragment length distribution.
 Properly paired reads are preferred for computation, i.e., unless a region does not contain any concordant pairs, discordant pairs are ignored.
 
 Output
-----------
+------
 
 The **default** output is a simple summary statistic for the observed fragment lengths.