# HG changeset patch
# User bgruening
# Date 1534969149 14400
# Node ID ec103ad3c567b15699b62296b669521d20203c53
# Parent  25ea52c58035984f5f1e40bbc5466026a949a10f
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3024062b63fdc502b46e4f328083493c2274182a

diff -r 25ea52c58035 -r ec103ad3c567 bamPEFragmentSize.xml
--- a/bamPEFragmentSize.xml	Mon Jul 09 18:11:39 2018 -0400
+++ b/bamPEFragmentSize.xml	Wed Aug 22 16:19:09 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="deeptools_bam_pe_fragmentsize" name="bamPEFragmentSize" version="@WRAPPER_VERSION@.0">
+<tool id="deeptools_bam_pe_fragmentsize" name="bamPEFragmentSize" version="@WRAPPER_VERSION@.0" profile="18.01">
     <description>Estimate the predominant cDNA fragment length from paired-end sequenced BAM/CRAM files</description>
     <macros>
         <token name="@BINARY@">bamPEFragmentSize</token>
diff -r 25ea52c58035 -r ec103ad3c567 deepTools_macros.xml
--- a/deepTools_macros.xml	Mon Jul 09 18:11:39 2018 -0400
+++ b/deepTools_macros.xml	Wed Aug 22 16:19:09 2018 -0400
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.1.0</token>
+    <token name="@WRAPPER_VERSION@">3.1.2.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.1.0">deeptools</requirement>
+            <requirement type="package" version="3.1.2">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -216,7 +216,7 @@
             label="Use a metagene model"
             help="If set and a BED12 or GTF file or files is used to provide regions, only exons will be used. This is convenient for looking at coverage over mature mRNA transcripts or similar uses where introns should be ignored." />
         <param argument="--transcriptID" optional="True" value="transcript" type="text"
-            label="trascript designator"
+            label="transcript designator"
             help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as transcripts. Default: transcript" />
         <param argument="--exonID" optional="True" value="exon" type="text"
             label="exon designator"
@@ -654,7 +654,7 @@
     </xml>
 
     <xml name="output_image_file_format">
-        <data format="png" name="outFileName" label="${tool.name} image">
+        <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image">
             <change_format>
                 <when input="output.outFileFormat" value="pdf" format="pdf" />
                 <when input="output.outFileFormat" value="svg" format="svg" />
@@ -665,7 +665,7 @@
     </xml>
 
     <xml name="output_image_file_format_not_nested">
-        <data format="png" name="outFileName" label="${tool.name} image">
+        <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image">
             <change_format>
                 <when input="outFileFormat" value="pdf" format="pdf" />
                 <when input="outFileFormat" value="svg" format="svg" />
diff -r 25ea52c58035 -r ec103ad3c567 test-data/plotPCA_result1.png
Binary file test-data/plotPCA_result1.png has changed
diff -r 25ea52c58035 -r ec103ad3c567 test-data/plotPCA_result2.png
Binary file test-data/plotPCA_result2.png has changed