Mercurial > repos > bgruening > deeptools_bigwig_compare
comparison bigwigCompare.xml @ 24:93eb012d9eed draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
| author | bgruening |
|---|---|
| date | Tue, 02 Apr 2019 08:10:58 -0400 |
| parents | 78e60b236515 |
| children | 3d211717a775 |
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| 23:9c346a32a053 | 24:93eb012d9eed |
|---|---|
| 26 #end if | 26 #end if |
| 27 | 27 |
| 28 #if $advancedOpt.showAdvancedOpt == "yes": | 28 #if $advancedOpt.showAdvancedOpt == "yes": |
| 29 | 29 |
| 30 $advancedOpt.skipNAs | 30 $advancedOpt.skipNAs |
| 31 $advancedOpt.skipZeroOverZero | |
| 31 --scaleFactors '$advancedOpt.scaleFactor1:$advancedOpt.scaleFactor2' | 32 --scaleFactors '$advancedOpt.scaleFactor1:$advancedOpt.scaleFactor2' |
| 32 --binSize $advancedOpt.binSize | 33 --binSize $advancedOpt.binSize |
| 33 | 34 |
| 34 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": | 35 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": |
| 35 --plotTitle '$advancedOpt.plotTitle' | 36 --plotTitle '$advancedOpt.plotTitle' |
| 93 <param argument="--binSize" type="integer" value="50" min="1" | 94 <param argument="--binSize" type="integer" value="50" min="1" |
| 94 label="Length, in bases, of the non-overlapping bins used for averaging the score over the regions length" | 95 label="Length, in bases, of the non-overlapping bins used for averaging the score over the regions length" |
| 95 help="Size of the bins in bases for the output of the bigwig/bedgraph file."/> | 96 help="Size of the bins in bases for the output of the bigwig/bedgraph file."/> |
| 96 | 97 |
| 97 <expand macro="skipNAs" /> | 98 <expand macro="skipNAs" /> |
| 99 <expand macro="skipZeroOverZero" /> | |
| 98 <expand macro="scaleFactors" /> | 100 <expand macro="scaleFactors" /> |
| 99 <expand macro="plotTitle" /> | 101 <expand macro="plotTitle" /> |
| 100 <expand macro="blacklist" /> | 102 <expand macro="blacklist" /> |
| 101 </when> | 103 </when> |
| 102 </conditional> | 104 </conditional> |