Mercurial > repos > bgruening > deeptools_bigwig_compare
view tool-data/lastz_seqs.loc.sample @ 26:26e7304d6737 draft
"planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 7c89456b6a986259c96b8d280c53e4ab155696ef"
author | bgruening |
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date | Sat, 25 Jan 2020 04:15:35 -0500 |
parents | 49a569aecb22 |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of 2bit genome files for use with deepTools. #This file is named lastz_seqs.loc file to make use of an already existing loc #file from the lastz tool that is created by the twobit data-manager. #You will need to supply these files and then create a lastz_seqs.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The lastz_seqs.loc #file has this format: # #<unique_build_id> <display_name> <file_path> # #So, for example, if your lastz_seqs.loc began like this: # #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit # #then your /depot/data2/galaxy/twobit/ directory #would need to contain the following 2bit files: # #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit # #Your lastz_seqs.loc file should include an entry per line for #each file you have stored that you want to be available. Note that #your files should all have the extension '2bit'. # #Please note that the <unique_build_id> is also used as "Species name abbreviation".