Mercurial > repos > bgruening > deeptools_bigwig_compare
changeset 24:93eb012d9eed draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
| author | bgruening |
|---|---|
| date | Tue, 02 Apr 2019 08:10:58 -0400 |
| parents | 9c346a32a053 |
| children | 71aa86af6762 |
| files | bigwigCompare.xml deepTools_macros.xml |
| diffstat | 2 files changed, 12 insertions(+), 2 deletions(-) [+] |
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--- a/bigwigCompare.xml Wed Feb 20 07:55:54 2019 -0500 +++ b/bigwigCompare.xml Tue Apr 02 08:10:58 2019 -0400 @@ -28,6 +28,7 @@ #if $advancedOpt.showAdvancedOpt == "yes": $advancedOpt.skipNAs + $advancedOpt.skipZeroOverZero --scaleFactors '$advancedOpt.scaleFactor1:$advancedOpt.scaleFactor2' --binSize $advancedOpt.binSize @@ -95,6 +96,7 @@ help="Size of the bins in bases for the output of the bigwig/bedgraph file."/> <expand macro="skipNAs" /> + <expand macro="skipZeroOverZero" /> <expand macro="scaleFactors" /> <expand macro="plotTitle" /> <expand macro="blacklist" />
--- a/deepTools_macros.xml Wed Feb 20 07:55:54 2019 -0500 +++ b/deepTools_macros.xml Tue Apr 02 08:10:58 2019 -0400 @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.2.0.0</token> + <token name="@WRAPPER_VERSION@">3.2.1.0</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.2.0">deeptools</requirement> + <requirement type="package" version="3.2.1">deeptools</requirement> <requirement type="package" version="1.9">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -650,6 +650,14 @@ (default: False)" /> </xml> + <xml name="skipZeroOverZero"> + <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage" + help="Skip bins where BOTH files lack coverage."> + <option value="" selected="true">No</option> + <option value="--skipZeroOverZero">Yes, skip them.</option> + </param> + </xml> + <xml name="exactScaling"> <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" label="Compute an exact scaling factor"