Mercurial > repos > bgruening > deeptools_compute_gc_bias

comparison computeGCBias.xml @ 19:f0fd1cdbe506 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754
author bgruening
date Thu, 05 Apr 2018 10:56:11 -0400
parents 1795fdfc23b8
children bb3e88bddd9f
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18:97f6bcb11bbf 19:f0fd1cdbe506
5 <import>deepTools_macros.xml</import> 5 <import>deepTools_macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 ln -s "$bamInput" "local_bamInput.bam" && 10 ln -s '$bamInput' local_bamInput.bam &&
11 #if $bamInput.ext == 'bam': 11 #if $bamInput.ext == 'bam':
12 ln -s '${bamInput.metadata.bam_index}' local_bamInput.bam.bai && 12 ln -s '${bamInput.metadata.bam_index}' local_bamInput.bam.bai &&
13 #else: 13 #else:
14 ln -s '${bamInput.metadata.cram_index}' local_bamInput.bam.crai && 14 ln -s '${bamInput.metadata.cram_index}' local_bamInput.bam.crai &&
15 #end if 15 #end if