Mercurial > repos > bgruening > deeptools_compute_matrix
comparison computeMatrix.xml @ 8:aee77c22123d draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
| author | bgruening |
|---|---|
| date | Tue, 20 Sep 2016 03:07:09 -0400 |
| parents | a842285199d9 |
| children | 6f334c8bd52f |
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| 7:17d456f4051b | 8:aee77c22123d |
|---|---|
| 74 --maxThreshold $advancedOpt.maxThreshold | 74 --maxThreshold $advancedOpt.maxThreshold |
| 75 #end if | 75 #end if |
| 76 #if $advancedOpt.scale is not None and str($advancedOpt.scale) != '': | 76 #if $advancedOpt.scale is not None and str($advancedOpt.scale) != '': |
| 77 --scale $advancedOpt.scale | 77 --scale $advancedOpt.scale |
| 78 #end if | 78 #end if |
| 79 | |
| 80 @ADVANCED_OPTS_GTF@ | |
| 81 | |
| 82 @blacklist@ | |
| 83 | |
| 79 #end if | 84 #end if |
| 80 ]]> | 85 ]]> |
| 81 </command> | 86 </command> |
| 82 <inputs> | 87 <inputs> |
| 83 | 88 |
| 204 numeric value will be skipped. The max threshold is useful to skip those | 209 numeric value will be skipped. The max threshold is useful to skip those |
| 205 few regions with very high read counts (e.g. major satellites) that may | 210 few regions with very high read counts (e.g. major satellites) that may |
| 206 bias the average values. (--maxThreshold)"/> | 211 bias the average values. (--maxThreshold)"/> |
| 207 <param name="scale" type="float" optional="True" label="Scaling factor" | 212 <param name="scale" type="float" optional="True" label="Scaling factor" |
| 208 help="If set, all values are multiplied by this number. (--scale)"/> | 213 help="If set, all values are multiplied by this number. (--scale)"/> |
| 214 | |
| 215 <expand macro="gtf_options" /> | |
| 216 | |
| 217 <expand macro="blacklist" /> | |
| 209 </when> | 218 </when> |
| 210 </conditional> | 219 </conditional> |
| 211 </inputs> | 220 </inputs> |
| 212 <outputs> | 221 <outputs> |
| 213 <data format="deeptools_compute_matrix_archive" name="outFileName" label="${tool.name} on ${on_string}: Matrix" /> | 222 <data format="deeptools_compute_matrix_archive" name="outFileName" label="${tool.name} on ${on_string}: Matrix" /> |