diff computeMatrix.xml @ 23:f305afa8ff0d draft

planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3cefc7d64faa53ef9a4e5984c7b275fc47cbdaaf

--- a/computeMatrix.xml	Tue Feb 19 10:06:00 2019 -0500
+++ b/computeMatrix.xml	Wed Feb 20 08:03:23 2019 -0500
@@ -24,6 +24,7 @@
             --scoreFileName #echo ' '.join($files)#
 
             --outFileName '$outFileName'
+            --samplesLabel #echo ' '.join($labels)#
 
             @THREADS@
 
@@ -72,9 +73,6 @@
                 #if $advancedOpt.scale is not None and str($advancedOpt.scale) != '':
                     --scale $advancedOpt.scale
                 #end if
-                #if $advancedOpt.samplesLabel is not None and str($advancedOpt.samplesLabel) != '':
-                    --samplesLabel $advancedOpt.samplesLabel
-                #end if
 
                 @ADVANCED_OPTS_GTF@
 
@@ -91,6 +89,7 @@
         </repeat>
 
         <expand macro="multiple_input_bigwigs" MIN="1" LABEL="Score file" TITLE="Score files"/>
+        <expand macro="custom_sample_labels" />
 
         <conditional name="mode" >
             <param name="mode_select" type="select"
@@ -207,15 +206,6 @@
                     bias the average values. (--maxThreshold)"/>
                 <param name="scale" type="float" optional="True" label="Scaling factor"
                     help="If set, all values are multiplied by this number. (--scale)"/>
-                <param argument="--samplesLabel" type="text" size="30"
-                    label="Labels for the samples (each bigwig)"
-                    help="The default is to use the history item label. The sample labels should be separated by
-                    spaces and quoted if a label itself contains a space E.g. label-1 &quot;label 2&quot;">
-                    <sanitizer>
-                        <valid initial="string.printable">
-                        </valid>
-                    </sanitizer>
-                </param>
 
                 <expand macro="gtf_options" />