# HG changeset patch
# User bgruening
# Date 1520026224 18000
# Node ID b357ab778a71ce1d9935449097c7e2946c3dcfa9
# Parent  79bc5d836c756b9b4c438958e4d682dbb1b05f99
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 72ae8f62333aa38d1c63034ddb37184a0f72c64e-dirty

diff -r 79bc5d836c75 -r b357ab778a71 computeMatrix.xml
--- a/computeMatrix.xml	Thu Feb 15 15:06:39 2018 -0500
+++ b/computeMatrix.xml	Fri Mar 02 16:30:24 2018 -0500
@@ -21,7 +21,7 @@
             $mode.mode_select
             --regionsFileName '#echo "' '".join($bed_files)#'
 
-            --scoreFileName '#echo "' '".join($files)#'
+            --scoreFileName #echo ' '.join($files)#
 
             --outFileName '$outFileName'
 
diff -r 79bc5d836c75 -r b357ab778a71 deepTools_macros.xml
--- a/deepTools_macros.xml	Thu Feb 15 15:06:39 2018 -0500
+++ b/deepTools_macros.xml	Fri Mar 02 16:30:24 2018 -0500
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.0.1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.0.0">deeptools</requirement>
+            <requirement type="package" version="3.0.1">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -456,7 +456,6 @@
             #for $counter, $f in enumerate($multibam_conditional.multibam_repeats):
                 #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier))
                 ln -s "${f.bamfiles}" "./${counter}.bam" &&
-                ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" &&
                 #if $f.bamfiles.ext == 'bam':
                     ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' &&
                 #else: