Mercurial > repos > bgruening > deeptools_correct_gc_bias

diff correctGCBias.xml @ 19:9e60bf557373 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754
author bgruening
date Thu, 05 Apr 2018 10:55:12 -0400
parents 3f84770b69cd
children 5bffaa8354a1
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line diff
--- a/correctGCBias.xml	Fri Mar 02 16:03:21 2018 -0500
+++ b/correctGCBias.xml	Thu Apr 05 10:55:12 2018 -0400
@@ -7,7 +7,7 @@
     <expand macro="requirements" />
     <command>
 <![CDATA[
-        ln -s "$bamInput" "local_bamInput.bam" &&
+        ln -s '$bamInput' local_bamInput.bam &&
         #if $bamInput.ext == 'bam':
             ln -s '${bamInput.metadata.bam_index}' local_bamInput.bam.bai &&
         #else:
@@ -17,7 +17,7 @@
         @BINARY@
             @THREADS@
             --bamfile local_bamInput.bam
-            --GCbiasFrequenciesFile "$GCbiasFrequenciesFile"
+            --GCbiasFrequenciesFile '$GCbiasFrequenciesFile'
 
             @reference_genome_source@