directory / @ 10:297bccb7d5c6 draft

name size permissions
dir. static/ images drwxr-xr-x
dir. test-data/ drwxr-xr-x
dir. tool-data/ drwxr-xr-x
file correctGCBias.xml 3500 -rw-r--r--
file datatypes_conf.xml 389 -rw-r--r--
file deepTools_macros.xml 40401 -rw-r--r--
file deepTools_macros.xml.orig 31864 -rw-r--r--
file readme.rst 2800 -rw-r--r--
file repository_dependencies.xml 199 -rw-r--r--
file tool_data_table_conf.xml.sample 378 -rw-r--r--
file tool_dependencies.xml 509 -rw-r--r--
PKoB] < s_mart-2c0c0a89fad7/SMART/Java/Python/CleanTranscriptFile.pyUTpQPKoB( !9 %s_mart-2c0c0a89fad7/SMART/Java/Python/ClusterizeByTags.pyUTpQPKoB9 6 큽s_mart-2c0c0a89fad7/SMART/Java/Python/CollapseReads.pyUTpQPKoBco4 "s_mart-2c0c0a89fad7/SMART/Java/Python/CombineTags.pyUTpQPKoBLcW; 큥#s_mart-2c0c0a89fad7/SMART/Java/Python/CompareOverlapping.pyUTpQPKoBNT 7/E 39s_mart-2c0c0a89fad7/SMART/Java/Python/CompareOverlappingSmallQuery.pyUTpQPKoB F .C Fs_mart-2c0c0a89fad7/SMART/Java/Python/CompareOverlappingSmallRef.pyUTpQPKoBsmz=8 Ss_mart-2c0c0a89fad7/SMART/Java/Python/ComputeCoverage.pyUTpQPKoBºg /2 ~\s_mart-2c0c0a89fad7/SMART/Java/Python/CountLoci.pyUTpQPKoB[-q; 큶gs_mart-2c0c0a89fad7/SMART/Java/Python/CountReadGCPercent.pyUTpQPKoB|JF8: ls_mart-2c0c0a89fad7/SMART/Java/Python/FindOverlapsOptim.pyUTpQPKoB *uVB ;}s_mart-2c0c0a89fad7/SMART/Java/Python/GetDifferentialExpression.pyUTpQPKoB݅ >8 `s_mart-2c0c0a89fad7/SMART/Java/Python/GetDistribution.pyUTpQPKoBO -4 큸s_mart-2c0c0a89fad7/SMART/Java/Python/GetFlanking.pyUTpQPKoBTA8 ݯs_mart-2c0c0a89fad7/SMART/Java/Python/GetIntersection.pyUTpQPKoBM:/8 2s_mart-2c0c0a89fad7/SMART/Java/Python/GetRandomSubset.pyUTpQPKoB.;< s_mart-2c0c0a89fad7/SMART/Java/Python/GetReadDistribution.pyUTpQPKoB+}25 크s_mart-2c0c0a89fad7/SMART/Java/Python/GetReadSizes.pyUTpQPKoBT*` 8 s_mart-2c0c0a89fad7/SMART/Java/Python/GetUpDownStream.pyUTpQPKoB /= 큵s_mart-2c0c0a89fad7/SMART/Java/Python/RestrictFromCoverage.pyUTpQPKoBnBl4 s_mart-2c0c0a89fad7/SMART/Java/Python/SelectByTag.pyUTpQPKoB/$"= s_mart-2c0c0a89fad7/SMART/Java/Python/WrappGetDistribution.pyUTpQPKoBA A 큆 s_mart-2c0c0a89fad7/SMART/Java/Python/WrappGetReadDistribution.pyUTpQPKoBI3: s_mart-2c0c0a89fad7/SMART/Java/Python/WrappPlotCoverage.pyUTpQPKoBtM = >s_mart-2c0c0a89fad7/SMART/Java/Python/WrappPlotRepartition.pyUTpQPKoB1 큲s_mart-2c0c0a89fad7/SMART/Java/Python/__init__.pyUTpQPKoBö8 s_mart-2c0c0a89fad7/SMART/Java/Python/adaptorStripper.pyUTpQPKoBڝ%': A"s_mart-2c0c0a89fad7/SMART/Java/Python/changeGffFeatures.shUTpQPKoB3ګ6 "s_mart-2c0c0a89fad7/SMART/Java/Python/changeTagName.pyUTpQPKoB˰~ 1 )s_mart-2c0c0a89fad7/SMART/Java/Python/cleanGff.pyUTpQPKoB9n @ 3s_mart-2c0c0a89fad7/SMART/Java/Python/cleaning/CleanerChooser.pyUTpQPKoBke@ 8s_mart-2c0c0a89fad7/SMART/Java/Python/cleaning/DefaultCleaner.pyUTpQPKoB?{k< %=s_mart-2c0c0a89fad7/SMART/Java/Python/cleaning/GffCleaner.pyUTpQPKoBs:C< Es_mart-2c0c0a89fad7/SMART/Java/Python/cleaning/GtfCleaner.pyUTpQPKoBc~; G 3Ls_mart-2c0c0a89fad7/SMART/Java/Python/cleaning/TranscriptListCleaner.pyUTpQPKoB: Ps_mart-2c0c0a89fad7/SMART/Java/Python/cleaning/__init__.pyUTpQPKoBxC~ P 3 _Qs_mart-2c0c0a89fad7/SMART/Java/Python/clusterize.pyUTpQPKoB8>bEC G\s_mart-2c0c0a89fad7/SMART/Java/Python/clusterizeBySlidingWindows.pyUTpQPKoB ); #ms_mart-2c0c0a89fad7/SMART/Java/Python/compareOverlapping.pyUTpQPKoB1 +=> =ws_mart-2c0c0a89fad7/SMART/Java/Python/convertTranscriptFile.pyUTpQPKoB zxv > [s_mart-2c0c0a89fad7/SMART/Java/Python/coordinatesToSequence.pyUTpQPKoB[0 Fs_mart-2c0c0a89fad7/SMART/Java/Python/findTss.pyUTpQPKoBlPA`bm- 큄s_mart-2c0c0a89fad7/SMART/Java/Python/fold.pyUTpQPKoB͓U 6 Js_mart-2c0c0a89fad7/SMART/Java/Python/getDifference.pyUTpQPKoB JH 44 s_mart-2c0c0a89fad7/SMART/Java/Python/getDistance.pyUTpQPKoBA p@8 ?s_mart-2c0c0a89fad7/SMART/Java/Python/getDistribution.pyUTpQPKoBuZP<*3 s_mart-2c0c0a89fad7/SMART/Java/Python/getElement.pyUTpQPKoB%1 큲s_mart-2c0c0a89fad7/SMART/Java/Python/getExons.pyUTpQPKoBX2 '; 큡s_mart-2c0c0a89fad7/SMART/Java/Python/getInfoPerCoverage.pyUTpQPKoB-~3 Es_mart-2c0c0a89fad7/SMART/Java/Python/getIntrons.pyUTpQPKoB{p> -s_mart-2c0c0a89fad7/SMART/Java/Python/getLetterDistribution.pyUTpQPKoBޮsE. 's_mart-2c0c0a89fad7/SMART/Java/Python/getNb.pyUTpQPKoBv4 .9 ?s_mart-2c0c0a89fad7/SMART/Java/Python/getRandomRegions.pyUTpQPKoB0K,r< s_mart-2c0c0a89fad7/SMART/Java/Python/getReadDistribution.pyUTpQPKoB86 4 큂s_mart-2c0c0a89fad7/SMART/Java/Python/getSequence.pyUTpQPKoBR_Y 1 #s_mart-2c0c0a89fad7/SMART/Java/Python/getSizes.pyUTpQPKoBDg3 큤s_mart-2c0c0a89fad7/SMART/Java/Python/getWigData.pyUTpQPKoBjBri7 us_mart-2c0c0a89fad7/SMART/Java/Python/getWigDistance.pyUTpQPKoB[vKQ !6 U!s_mart-2c0c0a89fad7/SMART/Java/Python/getWigProfile.pyUTpQPKoB|p^7 ,s_mart-2c0c0a89fad7/SMART/Java/Python/mapperAnalyzer.pyUTpQPKoB́%= Bs_mart-2c0c0a89fad7/SMART/Java/Python/mappingToCoordinates.pyUTpQPKoBʠ[rD Is_mart-2c0c0a89fad7/SMART/Java/Python/mergeSlidingWindowsClusters.pyUTpQPKoBy/0 #= PRs_mart-2c0c0a89fad7/SMART/Java/Python/mergeTranscriptLists.pyUTpQPKoBB8R> 큮\s_mart-2c0c0a89fad7/SMART/Java/Python/misc/MultipleRPlotter.pyUTpQPKoBG6 uds_mart-2c0c0a89fad7/SMART/Java/Python/misc/Progress.pyUTpQPKoB^ p6 sjs_mart-2c0c0a89fad7/SMART/Java/Python/misc/RPlotter.pyUTpQPKoB@ Az ? s_mart-2c0c0a89fad7/SMART/Java/Python/misc/UnlimitedProgress.pyUTpQPKoB 3 Vs_mart-2c0c0a89fad7/SMART/Java/Python/misc/Utils.pyUTpQPKoB6 큙s_mart-2c0c0a89fad7/SMART/Java/Python/misc/__init__.pyUTpQPKoBj4 s_mart-2c0c0a89fad7/SMART/Java/Python/modifyFasta.pyUTpQPKoBdkA ݚs_mart-2c0c0a89fad7/SMART/Java/Python/modifyGenomicCoordinates.pyUTpQPKoB1;; qs_mart-2c0c0a89fad7/SMART/Java/Python/modifySequenceList.pyUTpQPKoB`Uk&> 큹s_mart-2c0c0a89fad7/SMART/Java/Python/mySql/MySqlConnection.pyUTpQPKoB ʛQ= 큙s_mart-2c0c0a89fad7/SMART/Java/Python/mySql/MySqlExonTable.pyUTpQPKoBH 9 큨s_mart-2c0c0a89fad7/SMART/Java/Python/mySql/MySqlQuery.pyUTpQPKoB* E39 큾s_mart-2c0c0a89fad7/SMART/Java/Python/mySql/MySqlTable.pyUTpQPKoBmC s_mart-2c0c0a89fad7/SMART/Java/Python/mySql/MySqlTranscriptTable.pyUTpQPKoB7 hs_mart-2c0c0a89fad7/SMART/Java/Python/mySql/__init__.pyUTpQPKoBL?/p; s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/.NCList.py.swpUTpQPKoBGO@`A s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/.NCListCursor.py.swpUTpQPKoBv7Q7:9 rs_mart-2c0c0a89fad7/SMART/Java/Python/ncList/Benchmark.pyUTpQPKoBIz? 큐s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/ConvertToNCList.pyUTpQPKoBW7N͢:  s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/FileSorter.pyUTpQPKoBw5' K s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/FindOverlapsWithOneInterval.pyUTpQPKoB',m ,"P 큿s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/FindOverlapsWithSeveralIntervals.pyUTpQPKoBYŊ U!S Z)s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/FindOverlapsWithSeveralIntervalsBin.pyUTpQPKoB+r U n5s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/FindOverlapsWithSeveralIntervalsIndex.pyUTpQPKoBe<_A 큗>s_mart-2c0c0a89fad7/SMART/Java/Python/ncList/FindOverlaps_naif.pyUTpQPKoBƀ7 Ds_mart-2c0c0a89fad7/SMART/Java/Python/ncList/NCIndex.pyUTpQPKYY',I