changeset 30:e479c7ca5570 draft default tip

planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 4a4029b5c2e725b7cebc27217b76d23910508412
author bgruening
date Wed, 27 Sep 2023 20:24:42 +0000
parents 5bffaa8354a1
children
files deepTools_macros.xml test-data/heatmapper_result1.png test-data/heatmapper_result2.png test-data/plotCorrelation_result2.png test-data/plotFingerprint_quality_metrics.tabular test-data/profiler_result1.png
diffstat 6 files changed, 13 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/deepTools_macros.xml	Thu Jun 01 14:45:20 2023 +0000
+++ b/deepTools_macros.xml	Wed Sep 27 20:24:42 2023 +0000
@@ -1,8 +1,8 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@TOOL_VERSION@">3.5.2</token>
-    <token name="@GALAXY_VERSION@">20.01</token>
+    <token name="@TOOL_VERSION@">3.5.4</token>
+    <token name="@GALAXY_VERSION@">22.05</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">deeptools</requirement>
@@ -441,12 +441,15 @@
 	<when value="No">
 	</when>
 	<when value="Yes">
-	    <param argument="--labels" type="text" label="Sample Labels" help="Labels, separated by a space. If your labels themselves contain spaces then please enclose them in quotes (e.g., &quot;sample 1&quot; &quot;sample 2&quot;)">
-                <sanitizer>
-                    <valid initial="string.printable">
-                    </valid>
-                </sanitizer>
-            </param>
+	    <param argument="--labels" type="text" label="Sample Labels" help="Labels, separated by a space. If your labels themselves contain spaces then please enclose them in quotes (e.g., &apos;sample 1&apos;; &apos;sample 2&apos;)">
+            <sanitizer>
+                <valid initial="string.letters,string.digits,string.whitespace">
+                    <add value="&apos;" />
+                    <add value="_" />
+                </valid>
+            </sanitizer>
+            <validator type="regex">[A-Za-z0-9 =-_/+]+</validator>
+        </param>
 	</when>
         </conditional>
     </xml>
Binary file test-data/heatmapper_result1.png has changed
Binary file test-data/heatmapper_result2.png has changed
Binary file test-data/plotCorrelation_result2.png has changed
--- a/test-data/plotFingerprint_quality_metrics.tabular	Thu Jun 01 14:45:20 2023 +0000
+++ b/test-data/plotFingerprint_quality_metrics.tabular	Wed Sep 27 20:24:42 2023 +0000
@@ -1,3 +1,3 @@
 Sample	AUC	Synthetic AUC	X-intercept	Synthetic X-intercept	Elbow Point	Synthetic Elbow Point	JS Distance	Synthetic JS Distance	% genome enriched	diff. enrichment	CHANCE divergence
-bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	nan	0.2690044980681214	nan	nan	nan
-bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	0.0	0.2690044980681214	0	0	0
+bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	nan	0.269004498068121	nan	nan	nan
+bowtie2 test1.bam	0.00493632029863651	0.481650684757865	0.984443061605476	1.1531044350267195e-24	0.9849408836341008	0.5232688298112538	0.0	0.269004498068121	0	0	0
Binary file test-data/profiler_result1.png has changed