Mercurial > repos > bgruening > deeptools_multi_bam_summary

diff multiBamSummary.xml @ 8:6f67a9da7fce draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
author bgruening
date Mon, 19 Sep 2016 17:56:56 -0400
parents b319edc108a7
children d0800b8adbcb
line wrap: on
line diff
--- a/multiBamSummary.xml	Fri May 13 14:06:54 2016 -0400
+++ b/multiBamSummary.xml	Mon Sep 19 17:56:56 2016 -0400
@@ -36,6 +36,8 @@
 
             #if $advancedOpt.showAdvancedOpt == "yes":
                 @ADVANCED_OPTS_READ_PROCESSING@
+                @ADVANCED_OPTS_GTF@
+                @blacklist@
             #end if
 ]]>
     </command>
@@ -72,6 +74,8 @@
 
         <expand macro="advancedOpt_scaffold">
             <expand macro="read_processing_options" />
+            <expand macro="gtf_options" />
+            <expand macro="blacklist" />
         </expand>
 
         <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to file" help=""/>