Mercurial > repos > bgruening > deeptools_multi_bam_summary

diff multiBamSummary.xml @ 6:b319edc108a7 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 43d23f495200449aec91a41fd537603014aa93ba-dirty
author bgruening
date Sun, 24 Apr 2016 16:21:06 -0400
parents f2a582e0314d
children 6f67a9da7fce
line wrap: on
line diff
--- a/multiBamSummary.xml	Fri Mar 18 08:46:50 2016 -0400
+++ b/multiBamSummary.xml	Sun Apr 24 16:21:06 2016 -0400
@@ -16,8 +16,8 @@
             @THREADS@
 
             --outFileName '$outFile'
-            --bamfiles '#echo "' '".join($files)#'
-            --labels '#echo "' '".join($labels)#'
+            --bamfiles #echo " ".join($files)#
+            --labels #echo " ".join($labels)#
 
             #if $outRawCounts:
                 --outRawCounts '$outFileRawCounts'
@@ -85,13 +85,13 @@
     </outputs>
     <tests>
         <test>
-            <param name="bamfiles" value="bowtie2-test1.bam,bowtie2-test1.bam" ftype="bam" />
+            <param name="bamfiles" value="bowtie2 test1.bam,bowtie2 test1.bam" ftype="bam" />
             <param name="modeOpt" value="bins" />
             <param name="binSize" value="10" />
             <output name="outFile" file="multiBamSummary_result1.npz" ftype="deeptools_coverage_matrix" compare="sim_size" />
         </test>
         <test>
-            <param name="bamfiles" value="bowtie2-test1.bam,bowtie2-test1.bam" ftype="bam" />
+            <param name="bamfiles" value="bowtie2 test1.bam,bowtie2 test1.bam" ftype="bam" />
             <param name="modeOpt" value="BED-file" />
             <param name="region_file" value="multiBamSummary_regions.bed" />
             <output name="outFile" file="multiBamSummary_result2.npz" ftype="deeptools_coverage_matrix" compare="sim_size" />