diff multiBigwigSummary.xml @ 8:6fdfeeef190a draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe

--- a/multiBigwigSummary.xml	Fri May 13 14:13:30 2016 -0400
+++ b/multiBigwigSummary.xml	Tue Sep 20 02:58:58 2016 -0400
@@ -35,6 +35,11 @@
             #if str($region.value) != '':
                 --region '$region'
             #end if
+
+            #if $advancedOpt.showAdvancedOpt == "yes":
+                @ADVANCED_OPTS_GTF@
+                @blacklist@
+            #end if
 ]]>
     </command>
 
@@ -67,6 +72,11 @@
         <expand macro="region_limit_operation" />
         <param argument="--outRawCounts" type="boolean" label="Save raw counts (scores) to file" help=""/>
 
+        <expand macro="advancedOpt_scaffold">
+            <expand macro="gtf_options" />
+            <expand macro="blacklist" />
+        </expand>
+
     </inputs>
     <outputs>
         <data format="deeptools_coverage_matrix" name="outFile" label="${tool.name} on ${on_string}: correlation matrix" />