Mercurial > repos > bgruening > deeptools_plot_correlation
comparison plotCorrelation.xml @ 26:32e451def88c draft
"planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 7c89456b6a986259c96b8d280c53e4ab155696ef"
| author | bgruening |
|---|---|
| date | Sat, 25 Jan 2020 04:24:23 -0500 |
| parents | e97f5de6b2da |
| children | 2c66e43f1c86 |
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| 25:bd7db9e2f2cb | 26:32e451def88c |
|---|---|
| 16 @HEATMAP_OPTIONS@ | 16 @HEATMAP_OPTIONS@ |
| 17 --plotWidth $plotting_type.plotWidth | 17 --plotWidth $plotting_type.plotWidth |
| 18 --plotHeight $plotting_type.plotHeight | 18 --plotHeight $plotting_type.plotHeight |
| 19 #else: | 19 #else: |
| 20 --plotTitle '$plotting_type.plotTitle' | 20 --plotTitle '$plotting_type.plotTitle' |
| 21 #if str($plotting_type.xRange) != '': | 21 #if str($plotting_type.xrange_conditional.xrange_select) == 'yes': |
| 22 --xRange '$plotting_type.xRange' | 22 --xRange $plotting_type.xrange_conditional.xRange_min $plotting_type.xrange_conditional.xRange_max |
| 23 #end if | 23 #end if |
| 24 #if str($plotting_type.yRange) != '': | 24 #if str($plotting_type.yrange_conditional.yrange_select) == 'yes': |
| 25 --yRange '$plotting_type.yRange' | 25 --yRange $plotting_type.yrange_conditional.yRange_min $plotting_type.yrange_conditional.yRange_max |
| 26 #end if | 26 #end if |
| 27 $plotting_type.log1p | 27 $plotting_type.log1p |
| 28 #end if | 28 #end if |
| 29 $skipZeros | 29 $skipZeros |
| 30 --plotFileFormat '$outFileFormat' | 30 --plotFileFormat '$outFileFormat' |
| 48 <expand macro="heatmap_options" /> | 48 <expand macro="heatmap_options" /> |
| 49 <expand macro="plotWidthHeight" PLOTWIDTH="11.0" PLOTHEIGHT="9.5" /> | 49 <expand macro="plotWidthHeight" PLOTWIDTH="11.0" PLOTHEIGHT="9.5" /> |
| 50 </when> | 50 </when> |
| 51 <when value="scatterplot"> | 51 <when value="scatterplot"> |
| 52 <expand macro="plotTitle" /> | 52 <expand macro="plotTitle" /> |
| 53 <param argument="--xRange" type="text" value="" optional="true" | 53 <conditional name="xrange_conditional"> |
| 54 label="X axis range" | 54 <param type="select" name="xrange_select" label="Manually set X axis range?"> |
| 55 help="X axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." /> | 55 <option value="no" selected="True">No</option> |
| 56 <param argument="--yRange" type="text" value="" optional="true" | 56 <option value="yes">Yes</option> |
| 57 label="Y axis range" | 57 </param> |
| 58 help="Y axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." /> | 58 <when value="yes"> |
| 59 <param name="xRange_min" type="integer" value="0" label="X axis minimum value" | |
| 60 help="X axis minimum value. Not specifying this scales these such that the full range of dots is displayed." /> | |
| 61 <param name="xRange_max" type="integer" value="1000" label="X axis maximum value" | |
| 62 help="X axis maximum value. Not specifying this scales these such that the full range of dots is displayed." /> | |
| 63 </when> | |
| 64 <when value="no" /> | |
| 65 </conditional> | |
| 66 <conditional name="yrange_conditional"> | |
| 67 <param type="select" name="yrange_select" label="Manually set Y axis range?"> | |
| 68 <option value="no" selected="True">No</option> | |
| 69 <option value="yes">Yes</option> | |
| 70 </param> | |
| 71 <when value="yes"> | |
| 72 <param name="yRange_min" type="integer" value="0" label="Y axis minimum value" | |
| 73 help="Y axis minimum value. Not specifying this scales these such that the full range of dots is displayed." /> | |
| 74 <param name="yRange_max" type="integer" value="1000" label="Y axis maximum value" | |
| 75 help="Y axis maximum value. Not specifying this scales these such that the full range of dots is displayed." /> | |
| 76 </when> | |
| 77 <when value="no" /> | |
| 78 </conditional> | |
| 59 <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue="" | 79 <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue="" |
| 60 label="Log transform" | 80 label="Log transform" |
| 61 help="Plot the natural log of the scatter plot after adding 1. Note that this is ONLY for plotting, the correlation is unaffected." /> | 81 help="Plot the natural log of the scatter plot after adding 1. Note that this is ONLY for plotting, the correlation is unaffected." /> |
| 62 </when> | 82 </when> |
| 63 </conditional> | 83 </conditional> |