Mercurial > repos > bgruening > deeptools_plot_correlation
comparison plotCorrelation.xml @ 19:4e8b35fd2173 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754
| author | bgruening |
|---|---|
| date | Thu, 05 Apr 2018 10:52:28 -0400 |
| parents | 90d5df0a49bd |
| children | 68c06ccce7bf |
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| 18:498a1f3e8b1c | 19:4e8b35fd2173 |
|---|---|
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <command> | 8 <command> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 @BINARY@ | 10 @BINARY@ |
| 11 --corData "$corData" | 11 --corData '$corData' |
| 12 --plotFile "$outFileName" | 12 --plotFile '$outFileName' |
| 13 --corMethod "$corMethod" | 13 --corMethod '$corMethod' |
| 14 --whatToPlot "$plotting_type.whatToPlot" | 14 --whatToPlot '$plotting_type.whatToPlot' |
| 15 #if str($plotting_type.whatToPlot) == 'heatmap': | 15 #if str($plotting_type.whatToPlot) == 'heatmap': |
| 16 @HEATMAP_OPTIONS@ | 16 @HEATMAP_OPTIONS@ |
| 17 --plotWidth $plotting_type.plotWidth | 17 --plotWidth $plotting_type.plotWidth |
| 18 --plotHeight $plotting_type.plotHeight | 18 --plotHeight $plotting_type.plotHeight |
| 19 #else: | 19 #else: |
| 22 --maxRange '$plotting_type.maxRange' | 22 --maxRange '$plotting_type.maxRange' |
| 23 #end if | 23 #end if |
| 24 $plotting_type.log1p | 24 $plotting_type.log1p |
| 25 #end if | 25 #end if |
| 26 $skipZeros | 26 $skipZeros |
| 27 --plotFileFormat "$outFileFormat" | 27 --plotFileFormat '$outFileFormat' |
| 28 $removeOutliers | 28 $removeOutliers |
| 29 #if $outFileCorMatrix: | 29 #if $outFileCorMatrix: |
| 30 --outFileCorMatrix "$matrix" | 30 --outFileCorMatrix '$matrix' |
| 31 #end if | 31 #end if |
| 32 | 32 |
| 33 ]]> | 33 ]]> |
| 34 </command> | 34 </command> |
| 35 <inputs> | 35 <inputs> |