Mercurial > repos > bgruening > deeptools_plot_correlation

comparison plotCorrelation.xml @ 20:68c06ccce7bf draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb
author bgruening
date Mon, 09 Jul 2018 18:23:50 -0400
parents 4e8b35fd2173
children e97f5de6b2da
comparison
equal deleted inserted replaced
19:4e8b35fd2173 20:68c06ccce7bf
16 @HEATMAP_OPTIONS@ 16 @HEATMAP_OPTIONS@
17 --plotWidth $plotting_type.plotWidth 17 --plotWidth $plotting_type.plotWidth
18 --plotHeight $plotting_type.plotHeight 18 --plotHeight $plotting_type.plotHeight
19 #else: 19 #else:
20 --plotTitle '$plotting_type.plotTitle' 20 --plotTitle '$plotting_type.plotTitle'
21 #if str($plotting_type.maxRange) != '': 21 #if str($plotting_type.xRange) != '':
22 --maxRange '$plotting_type.maxRange' 22 --xRange '$plotting_type.xRange'
23 #end if
24 #if str($plotting_type.yRange) != '':
25 --yRange '$plotting_type.yRange'
23 #end if 26 #end if
24 $plotting_type.log1p 27 $plotting_type.log1p
25 #end if 28 #end if
26 $skipZeros 29 $skipZeros
27 --plotFileFormat '$outFileFormat' 30 --plotFileFormat '$outFileFormat'
45 <expand macro="heatmap_options" /> 48 <expand macro="heatmap_options" />
46 <expand macro="plotWidthHeight" PLOTWIDTH="11.0" PLOTHEIGHT="9.5" /> 49 <expand macro="plotWidthHeight" PLOTWIDTH="11.0" PLOTHEIGHT="9.5" />
47 </when> 50 </when>
48 <when value="scatterplot"> 51 <when value="scatterplot">
49 <expand macro="plotTitle" /> 52 <expand macro="plotTitle" />
50 <param argument="--maxRange" type="integer" value="" optional="true" 53 <param argument="--xRange" type="text" value="" optional="true"
51 label="Maximum Range" 54 label="X axis range"
52 help="Maximum (integer) value for the X and Y axes. The default scales these such that the full range of dots is displayed. If you specify --log1p, please ensure that this value is within the range it will produce." /> 55 help="X axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." />
56 <param argument="--yRange" type="text" value="" optional="true"
57 label="Y axis range"
58 help="Y axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." />
53 <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue="" 59 <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue=""
54 label="Log transform" 60 label="Log transform"
55 help="Plot the natural log of the scatter plot after adding 1. Note that this is ONLY for plotting, the correlation is unaffected." /> 61 help="Plot the natural log of the scatter plot after adding 1. Note that this is ONLY for plotting, the correlation is unaffected." />
56 </when> 62 </when>
57 </conditional> 63 </conditional>