Mercurial > repos > bgruening > deeptools_plot_coverage

comparison plotCoverage.xml @ 8:6fc072c36dc9 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
author bgruening
date Tue, 20 Sep 2016 03:02:08 -0400
parents 6a077ef72dd4
children 94b05ea80203
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7:70bf1a5592be 8:6fc072c36dc9
36 36
37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": 37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "":
38 --plotTitle '$advancedOpt.plotTitle' 38 --plotTitle '$advancedOpt.plotTitle'
39 #end if 39 #end if
40 @ADVANCED_OPTS_READ_PROCESSING@ 40 @ADVANCED_OPTS_READ_PROCESSING@
41 @blacklist@
41 #end if 42 #end if
42 43
43 ]]> 44 ]]>
44 </command> 45 </command>
45 <inputs> 46 <inputs>
58 help="Number of samples taken from the genome to compute the scaling factors."/> 59 help="Number of samples taken from the genome to compute the scaling factors."/>
59 <expand macro="region_limit_operation" /> 60 <expand macro="region_limit_operation" />
60 <expand macro="read_processing_options" /> 61 <expand macro="read_processing_options" />
61 <expand macro="skipZeros" /> 62 <expand macro="skipZeros" />
62 <expand macro="plotTitle" /> 63 <expand macro="plotTitle" />
64 <expand macro="blacklist" />
63 </when> 65 </when>
64 </conditional> 66 </conditional>
65 67
66 <expand macro="input_image_file_format" /> 68 <expand macro="input_image_file_format" />
67 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to a file" help=""/> 69 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to a file" help=""/>