Mercurial > repos > bgruening > deeptools_plot_coverage

comparison plotCoverage.xml @ 27:7fda5607e777 draft

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"planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 9308cb7fc910dba348d48fd0dce77a90264b7bdb"
author bgruening
date Fri, 11 Feb 2022 15:16:22 +0000
parents 4e12ea27f788
children 9368fbc49c8b
comparison
equal deleted inserted replaced
26:56bce3c82278 27:7fda5607e777
24 #if $outRawCounts: 24 #if $outRawCounts:
25 --outRawCounts '$outFileRawCounts' 25 --outRawCounts '$outFileRawCounts'
26 #end if 26 #end if
27 27
28 #if ' '.join(map(str, $BED)) != 'None': 28 #if ' '.join(map(str, $BED)) != 'None':
29 #set bedFileLList=[] 29 #set bedFileList=[]
30 #for $f in $BED: 30 #for $f in $BED:
31 #silent $bedFileList.append("'%s'" % $f) 31 #silent $bedFileList.append("'%s'" % $f)
32 #end for 32 #end for
33 #if $bedFileList != ["'None'"]: 33 #if $bedFileList != ["'None'"]:
34 --BED #echo ' '.join($bedFileList)# 34 --BED #echo ' '.join($bedFileList)#
99 <expand macro="skipZeros" /> 99 <expand macro="skipZeros" />
100 <expand macro="plotTitle" /> 100 <expand macro="plotTitle" />
101 <expand macro="blacklist" /> 101 <expand macro="blacklist" />
102 </when> 102 </when>
103 </conditional> 103 </conditional>
104
105 <expand macro="input_image_file_format" /> 104 <expand macro="input_image_file_format" />
106 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to a file" help=""/> 105 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to a file" help=""/>
107
108
109 </inputs> 106 </inputs>
110 <outputs> 107 <outputs>
111 <expand macro="output_image_file_format_not_nested" /> 108 <expand macro="output_image_file_format_not_nested" />
112 <data format="tabular" name="outFileRawCounts" label="${tool.name} on ${on_string}: bin counts"> 109 <data format="tabular" name="outFileRawCounts" label="${tool.name} on ${on_string}: bin counts">
113 <filter>outRawCounts is True</filter> 110 <filter>outRawCounts is True</filter>