Mercurial > repos > bgruening > deeptools_plot_coverage
comparison plotCoverage.xml @ 14:d4fdd10516f6 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b5fc4073c884a2d6a4092ea85150db1971010f28
| author | bgruening |
|---|---|
| date | Sun, 14 May 2017 18:54:36 -0400 |
| parents | 94b05ea80203 |
| children | e5b784148a9d |
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| 13:b8431744eab3 | 14:d4fdd10516f6 |
|---|---|
| 36 | 36 |
| 37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": | 37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": |
| 38 --plotTitle '$advancedOpt.plotTitle' | 38 --plotTitle '$advancedOpt.plotTitle' |
| 39 #end if | 39 #end if |
| 40 @ADVANCED_OPTS_READ_PROCESSING@ | 40 @ADVANCED_OPTS_READ_PROCESSING@ |
| 41 @PLOTWIDTHHEIGHT@ | |
| 41 @blacklist@ | 42 @blacklist@ |
| 42 #end if | 43 #end if |
| 43 | 44 |
| 44 ]]> | 45 ]]> |
| 45 </command> | 46 </command> |
| 46 <inputs> | 47 <inputs> |
| 47 | 48 |
| 48 <expand macro="multiple_input_bams" /> | 49 <expand macro="multiple_input_bams" MIN="1"/> |
| 49 | 50 |
| 50 <conditional name="advancedOpt"> | 51 <conditional name="advancedOpt"> |
| 51 <param name="showAdvancedOpt" type="select" label="Show advanced options" > | 52 <param name="showAdvancedOpt" type="select" label="Show advanced options" > |
| 52 <option value="no" selected="true">no</option> | 53 <option value="no" selected="true">no</option> |
| 53 <option value="yes">yes</option> | 54 <option value="yes">yes</option> |
| 55 <when value="no" /> | 56 <when value="no" /> |
| 56 <when value="yes"> | 57 <when value="yes"> |
| 57 <param argument="--numberOfSamples" type="integer" value="100000" min="1" | 58 <param argument="--numberOfSamples" type="integer" value="100000" min="1" |
| 58 label="Number of samples" | 59 label="Number of samples" |
| 59 help="Number of samples taken from the genome to compute the scaling factors."/> | 60 help="Number of samples taken from the genome to compute the scaling factors."/> |
| 61 <expand macro="plotWidthHeight" PLOTWIDTH="15.0" PLOTHEIGHT="5.0" /> | |
| 60 <expand macro="region_limit_operation" /> | 62 <expand macro="region_limit_operation" /> |
| 61 <expand macro="read_processing_options" /> | 63 <expand macro="read_processing_options" /> |
| 62 <expand macro="skipZeros" /> | 64 <expand macro="skipZeros" /> |
| 63 <expand macro="plotTitle" /> | 65 <expand macro="plotTitle" /> |
| 64 <expand macro="blacklist" /> | 66 <expand macro="blacklist" /> |