Mercurial > repos > bgruening > deeptools_plot_coverage

diff plotCoverage.xml @ 6:6a077ef72dd4 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 43d23f495200449aec91a41fd537603014aa93ba-dirty
author bgruening
date Sun, 24 Apr 2016 16:49:46 -0400
parents b9f2f76c250c
children 6fc072c36dc9
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line diff
--- a/plotCoverage.xml	Fri Mar 18 08:48:38 2016 -0400
+++ b/plotCoverage.xml	Sun Apr 24 16:49:46 2016 -0400
@@ -17,8 +17,8 @@
             @THREADS@
 
             --plotFile '$outFileName'
-            --bamfiles '#echo "' '".join($files)#'
-            --labels '#echo "' '".join($labels)#'
+            --bamfiles #echo " ".join($files)#
+            --labels #echo " ".join($labels)#
             --plotFileFormat "$outFileFormat"
 
             #if $outRawCounts:
@@ -76,13 +76,13 @@
     </outputs>
     <tests>
         <test>
-            <param name="bamfiles" value="bowtie2-test1.bam,bowtie2-test1.bam" ftype="bam" />
+            <param name="bamfiles" value="bowtie2 test1.bam,bowtie2 test1.bam" ftype="bam" />
             <!--param name="outFileFormat" value="png" /-->
             <param name="showAdvancedOpt" value="yes" />
             <param name="plotTitle" value="Test Title from Galaxy" />
             <param name="outRawCounts" value="True" />
             <output name="outFileRawCounts" file="plotCoverage_result1.tabular" ftype="tabular" />
-            <output name="outFileName" file="plotCoverage_result1.png" ftype="png" compare="sim_size" delta="2200" />
+            <output name="outFileName" file="plotCoverage_result1.png" ftype="png" compare="sim_size" delta="2400" />
         </test>
     </tests>
     <help>