Mercurial > repos > bgruening > deeptools_plot_fingerprint
comparison plotFingerprint.xml @ 2:91b340ca9e92 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 7150f0c106abd56920767518cc331ef6e4e7f439
| author | bgruening |
|---|---|
| date | Thu, 18 Feb 2016 11:44:30 -0500 |
| parents | a6d0ddc266bf |
| children | d0c03d57e471 |
comparison
equal
deleted
inserted
replaced
| 1:a6d0ddc266bf | 2:91b340ca9e92 |
|---|---|
| 142 :width: 600 | 142 :width: 600 |
| 143 :height: 450 | 143 :height: 450 |
| 144 | 144 |
| 145 ----------------------------- | 145 ----------------------------- |
| 146 | 146 |
| 147 Background | 147 Theoretical Background |
| 148 -------------- | 148 ---------------------- |
| 149 | 149 |
| 150 The tool first samples indexed BAM files and counts all reads overlapping a window (bin) of the specified length. | 150 The tool first samples indexed BAM files and counts all reads overlapping a window (bin) of the specified length. |
| 151 These counts are then sorted according to their rank (the bin with the highest number of reads has the highest rank) | 151 These counts are then sorted according to their rank (the bin with the highest number of reads has the highest rank) |
| 152 and the cumulative sum of read counts are plotted. An ideal input (control) with a uniform distribution of reads alignments | 152 and the cumulative sum of read counts are plotted. An ideal input (control) with a uniform distribution of reads alignments |
| 153 result in a diagonal line. A very specific and strong ChIP enrichment, on the other hand, would result in a large portion | 153 result in a diagonal line. A very specific and strong ChIP enrichment, on the other hand, would result in a large portion |