view tool-data/lastz_seqs.loc.sample @ 27:ca8a7f0ea872 draft

"planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 9308cb7fc910dba348d48fd0dce77a90264b7bdb"

#This is a sample file distributed with Galaxy that enables tools
#to use a directory of 2bit genome files for use with deepTools. 
#This file is named lastz_seqs.loc file to make use of an already existing loc
#file from the lastz tool that is created by the twobit data-manager.
#You will need to supply these files and then create a lastz_seqs.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The lastz_seqs.loc
#file has this format:
#
#<unique_build_id>	<display_name>	<file_path>
#
#So, for example, if your lastz_seqs.loc began like this:
#
#hg18	Human (Homo sapiens): hg18	/depot/data2/galaxy/twobit/hg18.2bit
#hg19	Human (Homo sapiens): hg19	/depot/data2/galaxy/twobit/hg19.2bit
#mm9	Mouse (Mus musculus): mm9	/depot/data2/galaxy/twobit/mm9.2bit
#
#then your /depot/data2/galaxy/twobit/ directory
#would need to contain the following 2bit files:
#
#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 hg18.2bit
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
#
#Your lastz_seqs.loc file should include an entry per line for 
#each file you have stored that you want to be available. Note that 
#your files should all have the extension '2bit'.
#
#Please note that the <unique_build_id> is also used as "Species name abbreviation".