Mercurial > repos > bgruening > deeptools_plot_pca
comparison plotPCA.xml @ 19:d9376d223fad draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754
| author | bgruening |
|---|---|
| date | Thu, 05 Apr 2018 10:54:35 -0400 |
| parents | f2f1ca0f032f |
| children | 93ce2662f917 |
comparison
equal
deleted
inserted
replaced
| 18:396dfbc32304 | 19:d9376d223fad |
|---|---|
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <command> | 8 <command> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 @BINARY@ | 10 @BINARY@ |
| 11 --corData "$corData" | 11 --corData '$corData' |
| 12 --plotTitle "$plotTitle" | 12 --plotTitle '$plotTitle' |
| 13 --plotFile "$outFileName" | 13 --plotFile '$outFileName' |
| 14 --plotFileFormat "$outFileFormat" | 14 --plotFileFormat '$outFileFormat' |
| 15 #if str($advancedOpt.showAdvancedOpt) == 'yes': | 15 #if str($advancedOpt.showAdvancedOpt) == 'yes': |
| 16 @PLOTWIDTHHEIGHT@ | 16 @PLOTWIDTHHEIGHT@ |
| 17 $advancedOpt.log2 | 17 $advancedOpt.log2 |
| 18 --PCs $advancedOpt.PCs | 18 --PCs $advancedOpt.PCs |
| 19 --ntop $advancedOpt.ntop | 19 --ntop $advancedOpt.ntop |
| 22 #if $advancedOpt.colors: | 22 #if $advancedOpt.colors: |
| 23 --colors $advancedOpt.colors | 23 --colors $advancedOpt.colors |
| 24 #end if | 24 #end if |
| 25 #end if | 25 #end if |
| 26 #if $outFileNameData | 26 #if $outFileNameData |
| 27 --outFileNameData "$output_outFileNameData" | 27 --outFileNameData '$output_outFileNameData' |
| 28 #end if | 28 #end if |
| 29 ]]> | 29 ]]> |
| 30 </command> | 30 </command> |
| 31 <inputs> | 31 <inputs> |
| 32 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the multiBamSummary or multiBigwigSummary tools"/> | 32 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the multiBamSummary or multiBigwigSummary tools"/> |