diff plotPCA.xml @ 14:dfe535b75616 draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b5fc4073c884a2d6a4092ea85150db1971010f28

--- a/plotPCA.xml	Fri Mar 31 18:24:05 2017 -0400
+++ b/plotPCA.xml	Sun May 14 19:13:36 2017 -0400
@@ -12,6 +12,9 @@
             --plotTitle "$plotTitle"
             --plotFile "$outFileName"
             --plotFileFormat "$outFileFormat"
+            #if str($advancedOpt.showAdvancedOpt) == 'yes':
+                @PLOTWIDTHHEIGHT@
+            #end if
             $rowCenter
             #if $outFileNameData
                 --outFileNameData "$output_outFileNameData"
@@ -24,6 +27,16 @@
         <expand macro="plotTitle" />
         <param argument="--outFileNameData" type="boolean" label="Save the matrix of PCA and eigenvalues underlying the plot."/>
         <param argument="--rowCenter" type="boolean" label="Center Rows?" help="When specified, each row (bin, gene, etc.) in the matrix is centered at 0 before the PCA is computed. This is useful only if you have a strong bin/gene/etc. correlation and the resulting principal component has samples stacked vertically." truevalue="--rowCenter" falsevalue="" />
+        <conditional name="advancedOpt">
+            <param name="showAdvancedOpt" type="select" label="Show advanced options" >
+                <option value="no" selected="true">no</option>
+                <option value="yes">yes</option>
+            </param>
+            <when value="no" />
+            <when value="yes">
+                <expand macro="plotWidthHeight" PLOTWIDTH="5.0" PLOTHEIGHT="10.0" />
+            </when>
+        </conditional>
     </inputs>
     <outputs>
         <expand macro="output_image_file_format_not_nested" />