diff plotProfiler.xml @ 3:c73c5d2c94b3 draft

planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c

--- a/plotProfiler.xml	Thu Feb 18 11:54:57 2016 -0500
+++ b/plotProfiler.xml	Wed Mar 09 18:36:45 2016 -0500
@@ -60,6 +60,10 @@
                     --yMax $advancedOpt.yMax
                 #end if
 
+                #if $advancedOpt.outFileNameData:
+                    --outFileNameData "$output_outFileNameData"
+                #end if
+
                 @KMEANS_CLUSTERING@
 
             #end if
@@ -154,6 +158,8 @@
                     label="Make one plot per group of regions"
                     help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " />
 
+                <param argument="--outFileNameData" type="boolean" label="Save the data underlying the average profile"
+                    help="This option will create an additional output file." />
 
                 <param argument="--yMin" type="float" value="" size="3" optional="true"
                     label="Minimum value for the Y-axis of the summary plot. Leave empty for automatic values"/>
@@ -168,6 +174,11 @@
     <outputs>
         <expand macro="output_image_file_format" />
         <expand macro="output_graphic_outputs" />
+
+        <data format="tabular" name="output_outFileNameData" label="${tool.name} on ${on_string}: Underlying data">
+            <filter>outFileNameData</filter>
+        </data>
+
     </outputs>
     <tests>
         <test>
@@ -178,7 +189,9 @@
             <param name="matrixFile" value="computeMatrix_result1.gz" ftype="deeptools_compute_matrix_archive" />
             <param name="showAdvancedOpt" value="yes" />
             <param name="showScaleRegionsOpt" value="yes" />
+            <param name="outFileNameData" value="True" />
             <output name="outFileName" file="profiler_result2.png" ftype="png" compare="sim_size" delta="4000" />
+            <output name="output_outFileNameData" file="profiler_result2.tabular" ftype="tabular" />
         </test>
     </tests>
     <help>