Mercurial > repos > bgruening > deeptools_workflows
changeset 0:16fc7f46ee23 draft default tip
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 03 Apr 2014 11:11:15 -0400 |
| parents | |
| children | |
| files | 1_BAM_file_TO_Heatmap_of_read_coverages.ga 2_BAM_files_TO_clustered_Heatmap_of_read_coverages.ga Add_chr_to_first_column_of_a_6_columns_BED_file.ga Clustered_heatmap_of_signals_around_the_TSSs__1_bigWig_TO_heatmap.ga Compute_and_correct_GC_bias.ga Remove_chr_from_the_beginning_of_genomic_interval_files.ga readme.rst repository_dependencies.xml |
| diffstat | 8 files changed, 1163 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Thu Apr 03 11:11:15 2014 -0400 @@ -0,0 +1,41 @@ +This package contains a collection of Galaxy workflows utilising deepTools. + +See http://www.galaxyproject.org for information about the Galaxy Project. + + +Sample Data +=========== + +Sample data can be obtained from http://deeptools.ie-freiburg.mpg.de/library or you +can use aligned reads in BAM or SAM format. + + + +Citation +======== + +If you use this workflow directly, or a derivative of it, or the associated +deepTools wrappers for Galaxy, in work leading to a scientific publication, +please cite: + +{publication under review} + + +Availability +============ + +This workflow is available on the main Galaxy Tool Shed: + +http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_workflows + +Development is being done on github: + +https://github.com/fidelram/deepTools + + +Dependencies +============ + +These dependencies should be resolved automatically via the Galaxy Tool Shed: + +* http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Thu Apr 03 11:11:15 2014 -0400 @@ -0,0 +1,4 @@ +<?xml version="1.0"?> +<repositories description="These workflows requires the deepTools repository."> + <repository changeset_revision="f7712a057440" name="deeptools" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu" /> +</repositories>