Mercurial > repos > bgruening > diamond
comparison diamond_makedb.xml @ 7:62c9df8382c2 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diamond commit b2d290a8b609ebbc7f4b93716370143c41062ad4"
| author | bgruening |
|---|---|
| date | Tue, 03 Dec 2019 17:40:05 -0500 |
| parents | 64be1ac21109 |
| children | 54f751e413f4 |
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| 6:64be1ac21109 | 7:62c9df8382c2 |
|---|---|
| 1 <tool id="bg_diamond_makedb" name="Diamond makedb" version="@VERSION@"> | 1 <tool id="bg_diamond_makedb" name="Diamond makedb" version="@VERSION@" profile="19.01"> |
| 2 <description>Build database from a FASTA file</description> | 2 <description>Build database from a FASTA file</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 | 6 |
| 71 times faster than BLASTX, finding more than 94% of all matches. | 71 times faster than BLASTX, finding more than 94% of all matches. |
| 72 | 72 |
| 73 .. _DIAMOND: http://ab.inf.uni-tuebingen.de/software/diamond/ | 73 .. _DIAMOND: http://ab.inf.uni-tuebingen.de/software/diamond/ |
| 74 | 74 |
| 75 | 75 |
| 76 - taxonmap: Path to mapping file that maps NCBI protein accession numbers to taxon ids (gzip compressed). This parameter is optional and needs to be supplied in order to provide taxonomy features. The file can be downloaded from NCBI: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/prot.accession2taxid.gz | 76 - taxonmap: Path to mapping file that maps NCBI protein accession numbers to taxon ids (gzip compressed). This parameter is optional and needs to be supplied in order to provide taxonomy features. The file can be downloaded from NCBI: ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/prot.accession2taxid.gz |
| 77 | 77 |
| 78 - taxonnodes: Path to the nodes.dmp file from the NCBI taxonomy. This parameter is optional and needs to be supplied in order to provide taxonomy features. The file is contained within this archive downloadable at NCBI: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdmp.zip | 78 - taxonnodes: Path to the nodes.dmp file from the NCBI taxonomy. This parameter is optional and needs to be supplied in order to provide taxonomy features. The file is contained within this archive downloadable at NCBI: ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdmp.zip |
| 79 ]]> | 79 ]]> |
| 80 </help> | 80 </help> |
| 81 | 81 |
| 82 <expand macro="citations" /> | 82 <expand macro="citations" /> |
| 83 </tool> | 83 </tool> |