comparison diamond_view.xml @ 9:f921014aba5a draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond commit 828c844036743151594e57cc19811f4c8d9179b3"

8:54f751e413f4

<tool id="bg_diamond_view" name="Diamond view" version="@VERSION@" profile="19.01">
    <description>generate formatted output from DAA files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

    </inputs>
    <outputs>
        <expand macro="output_macro" />
    </outputs>
    <tests>
        <test>
            <param name="daa" ftype="daa" value="diamond_results.daa" />
            <conditional name="output">
                <param name="outfmt" value="5"/>
            </conditional>
            <conditional name="hit_filter">
                <param name="hit_filter_select" value="max"/>
                <param name="max_target_seqs" value="1" />
            </conditional>
            <output name="blast_tabular" file="diamond_results.xml"/>
        </test>
        <test>
            <param name="daa" ftype="daa" value="diamond_results.daa" />
            <conditional name="output">
                <param name="outfmt" value="6"/>
                <param name="fields" value="qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,cigar,scovhsp"/>
            </conditional>
            <output name="blast_tabular" file="diamond_view_results.tabular"/>
        </test>
        <test>
            <param name="daa" ftype="daa" value="diamond_results.daa" />
            <conditional name="output">
                <param name="outfmt" value="101"/>
            </conditional>
            <conditional name="hit_filter">

9:f921014aba5a

<tool id="bg_diamond_view" name="Diamond view" version="@TOOL_VERSION@.1" profile="19.01">
    <description>generate formatted output from DAA files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

    </inputs>
    <outputs>
        <expand macro="output_macro" />
    </outputs>
    <tests>
        <test expect_num_outputs="1">
            <param name="daa" ftype="daa" value="diamond_results.daa" />
            <conditional name="output">
                <param name="outfmt" value="5"/>
            </conditional>
            <conditional name="hit_filter">
                <param name="hit_filter_select" value="max"/>
                <param name="max_target_seqs" value="1" />
            </conditional>
            <output name="blast_tabular" file="diamond_results.xml"/>
        </test>
        <test expect_num_outputs="1">
            <param name="daa" ftype="daa" value="diamond_results.daa" />
            <conditional name="output">
                <param name="outfmt" value="6"/>
                <param name="fields" value="qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,cigar,scovhsp"/>
            </conditional>
            <output name="blast_tabular" file="diamond_view_results.tabular"/>
        </test>
        <test expect_num_outputs="1">
            <param name="daa" ftype="daa" value="diamond_results.daa" />
            <conditional name="output">
                <param name="outfmt" value="101"/>
            </conditional>
            <conditional name="hit_filter">