diff macros.xml @ 7:62c9df8382c2 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diamond commit b2d290a8b609ebbc7f4b93716370143c41062ad4"

--- a/macros.xml	Thu Sep 27 06:30:30 2018 -0400
+++ b/macros.xml	Tue Dec 03 17:40:05 2019 -0500
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION@">0.9.21</token>
+    <token name="@VERSION@">0.9.29</token>
 
     <xml name="requirements">
         <requirements>
@@ -9,12 +9,9 @@
 
     <xml name="stdio">
         <stdio>
-            <!-- disabled error detection by exit code to be able to detect oom errors by 
-                 regex, can be reenabled when https://github.com/galaxyproject/galaxy/pull/6338 is merged
             <exit_code range=":-1" level="fatal"  description="Error occurred. Please check Tool Standard Error" />
-            <exit_code range="1:" level="fatal"  description="Error occurred. Please check Tool Standard Error" />-->
+            <exit_code range="1:" level="fatal"  description="Error occurred. Please check Tool Standard Error" />
             <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" />
-            <regex match=".+" source="stderr" level="fatal" description=""/>
         </stdio>
     </xml>
 
@@ -65,6 +62,11 @@
                     <option value="salltitles">All Subject Title(s)</option>
                     <option value="qcovhsp">Query Coverage Per HSP</option>
                     <option value="qtitle">Query title</option>
+                    <option value="full_qseq">Query sequence</option>
+                    <option value="full_sseq">Subject sequence</option>
+                    <option value="qqual">Query quality values for the aligned part of the query</option>
+                    <option value="full_qqual">Query quality values</option>
+                    <option value="qstrand">Query strand</option>
                 </param>
             </when>
             <when value="100">