Mercurial > repos > bgruening > diamond
changeset 13:20d92dc4c6cb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond commit b2634d43c65880b8450221276487b3198a8fe03c
| author | iuc |
|---|---|
| date | Tue, 10 Jun 2025 13:52:02 +0000 |
| parents | 60f307965815 |
| children | |
| files | diamond.xml macros.xml test-data/diamond_results.sam test-data/diamond_results.xml |
| diffstat | 4 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/diamond.xml Mon Feb 03 16:01:01 2025 +0000 +++ b/diamond.xml Tue Jun 10 13:52:02 2025 +0000 @@ -714,7 +714,7 @@ <output name="blast_tabular" file="diamond_results_log_test.tabular"/> <output name="log_file"> <assert_contents> - <has_n_lines n="261"/> + <has_n_lines n="259"/> <has_text text="diamond blastx --quiet"/> <has_text text="--log"/> <has_line line="Sequences = 6, letters = 1694, average length = 282"/>
--- a/macros.xml Mon Feb 03 16:01:01 2025 +0000 +++ b/macros.xml Tue Jun 10 13:52:02 2025 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">2.1.11</token> + <token name="@TOOL_VERSION@">2.1.12</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements>
--- a/test-data/diamond_results.sam Mon Feb 03 16:01:01 2025 +0000 +++ b/test-data/diamond_results.sam Tue Jun 10 13:52:02 2025 +0000 @@ -1,5 +1,5 @@ @HD VN:1.5 SO:query -@PG PN:DIAMOND VN:2.1.11 CL:diamond view --threads 1 --daa input.daa --outfmt 101 --out /tmp/tmp61jyo35f/job_working_directory/000/6/outputs/dataset_bb83a399-fa7d-414f-afff-28cb61b3cd8d.dat --top 0 --forwardonly --verbose +@PG PN:DIAMOND VN:2.1.12 CL:diamond view --threads 1 --daa input.daa --outfmt 101 --out /tmp/tmpbpupgk43/job_working_directory/000/6/outputs/dataset_dee40593-f3ac-46ef-ab6b-389367231bbc.dat --top 0 --forwardonly --verbose @mm BlastP @CO BlastP-like alignments @CO Reporting AS: bitScore, ZR: rawScore, ZE: expected, ZI: percent identity, ZL: reference length, ZF: frame, ZS: query start DNA coordinate
--- a/test-data/diamond_results.xml Mon Feb 03 16:01:01 2025 +0000 +++ b/test-data/diamond_results.xml Tue Jun 10 13:52:02 2025 +0000 @@ -2,7 +2,7 @@ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastp</BlastOutput_program> - <BlastOutput_version>diamond 2.1.11</BlastOutput_version> + <BlastOutput_version>diamond 2.1.12</BlastOutput_version> <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), "Fast and sensitive protein alignment using DIAMOND", Nature Methods 12:59-60.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>