Mercurial > repos > bgruening > diffbind

changeset 2:492d5ac7b2e2 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
author bgruening
date Fri, 26 Feb 2016 13:36:05 -0500
parents 9e9f85c20d99
children d6dcb3dd5f8f
files diffbind.tar.bz2 diffbind.xml tool_dependencies.xml
diffstat 3 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
Binary file diffbind.tar.bz2 has changed
--- a/diffbind.xml	Tue Sep 08 05:38:45 2015 -0400
+++ b/diffbind.xml	Fri Feb 26 13:36:05 2016 -0500
@@ -1,6 +1,8 @@
 <tool id="diffbind" name="DiffBind" version="2.0.2">
     <description> differential binding analysis of ChIP-Seq peak data</description>
     <requirements>
+        <requirement type="binary">Rscript</requirement>
+        <requirement type="R-module">DESeq2</requirement>
         <requirement type="package" version="3.0.3">R</requirement>
         <requirement type="package" version="1.2.10">deseq2</requirement>
         <requirement type="package" version="1.8.3">diffbind</requirement>
--- a/tool_dependencies.xml	Tue Sep 08 05:38:45 2015 -0400
+++ b/tool_dependencies.xml	Fri Feb 26 13:36:05 2016 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R" version="3.0.3">
-        <repository changeset_revision="a8438aa1207c" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="afc48696ee5c" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="deseq2" version="1.2.10">
         <repository changeset_revision="2d4a7ae561d6" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
@@ -10,7 +10,7 @@
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="a8438aa1207c" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="afc48696ee5c" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="R" version="3.0.3" />
                     </repository>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package>