Mercurial > repos > bgruening > dotknot
comparison test-data/test1_output.txt @ 0:42d20ff5da1b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 1973f3035c10db80883d80847ea254289f5cce2a-dirty
| author | bgruening |
|---|---|
| date | Thu, 17 Sep 2015 17:10:07 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:42d20ff5da1b |
|---|---|
| 1 | |
| 2 >TMV | |
| 3 UGCAACUUGAGGUAGUCAAGAUGCAUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGAGGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA | |
| 4 Sequence length: 214 | |
| 5 Using TMV as file identifier | |
| 6 | |
| 7 DotKnot is running... | |
| 8 Predicting pseudoknots... | |
| 9 | |
| 10 Detected pseudoknots: | |
| 11 35 56 -10.97 | |
| 12 ACGGAUUGUGUCCGUAAUCACA | |
| 13 (((((.[[[[)))))...]]]] | |
| 14 | |
| 15 57 78 -12.92 | |
| 16 CGUGGUGCGUACGAUAACGCAU | |
| 17 (((.[[[[[[)))...]]]]]] | |
| 18 | |
| 19 79 108 -8.16 | |
| 20 AGUGUUUUUCCCUCCACUUAAAUCGAAGGG | |
| 21 ((((.....[[[[.))))........]]]] | |
| 22 | |
| 23 111 176 -26.94 | |
| 24 GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGA | |
| 25 ((((((....[[[[((((((.....(((((((...)))))))))))))))))))........]]]] | |
| 26 | |
| 27 192 210 -13.83 | |
| 28 CCGUUACCCCCGGUAGGGG | |
| 29 (((...[[[[)))..]]]] | |
| 30 |