Mercurial > repos > bgruening > dotknot

diff test-data/test1_output.txt @ 0:42d20ff5da1b draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 1973f3035c10db80883d80847ea254289f5cce2a-dirty
author bgruening
date Thu, 17 Sep 2015 17:10:07 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test1_output.txt	Thu Sep 17 17:10:07 2015 -0400
@@ -0,0 +1,30 @@
+
+>TMV
+UGCAACUUGAGGUAGUCAAGAUGCAUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGAGGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA
+Sequence length:  214
+Using TMV as file identifier
+
+DotKnot is running...
+Predicting pseudoknots...
+
+Detected pseudoknots:
+35 56 -10.97
+ACGGAUUGUGUCCGUAAUCACA
+(((((.[[[[)))))...]]]]
+
+57 78 -12.92
+CGUGGUGCGUACGAUAACGCAU
+(((.[[[[[[)))...]]]]]]
+
+79 108 -8.16
+AGUGUUUUUCCCUCCACUUAAAUCGAAGGG
+((((.....[[[[.))))........]]]]
+
+111 176 -26.94
+GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGA
+((((((....[[[[((((((.....(((((((...)))))))))))))))))))........]]]]
+
+192 210 -13.83
+CCGUUACCCCCGGUAGGGG
+(((...[[[[)))..]]]]
+