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annotate annotate_pan_genome.sh @ 0:f1a157358d4d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
author bgruening
date Sun, 16 Oct 2022 12:41:19 +0000
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f1a157358d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
bgruening
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1 #!/usr/bin/env bash
f1a157358d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
bgruening
parents:
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f1a157358d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
bgruening
parents:
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3 lib=NAM.EDTA1.8.0.MTEC02052020.TElib.fa
f1a157358d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
bgruening
parents:
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4 genome=($1)
f1a157358d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
bgruening
parents:
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f1a157358d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta commit 24cb0421330e54b144b3e6f1be4ae35ac0e48c1c
bgruening
parents:
diff changeset
6 RepeatMasker -pa 36 -q -div 40 -lib $lib -cutoff 225 -gff $genome