annotate test-data/ele.asm1_post_gfastats.txt @ 3:3dd6be0cd8dd draft default tip

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit 720787c4fb8885f5127ab6ada2813f8dd580921c

+++Assembly summary+++: 
Expected genome size: 3013249396
# scaffolds: 104
Total scaffold length: 3343225297
Average scaffold length: 32146397.09
Scaffold N50: 125437426
Scaffold auN: 138197339.10
Scaffold L50: 10
Scaffold NG50: 134090202
Scaffold auNG: 153331098.53
Scaffold LG50: 8
Largest scaffold: 243324329
Smallest scaffold: 1
# contigs: 178
Total contig length: 3343086611
Average contig length: 18781385.46
Contig N50: 77716104
Contig auN: 88503007.28
Contig L50: 14
Contig NG50: 82586413
Contig auNG: 98190750.18
Contig LG50: 12
Largest contig: 204998129
Smallest contig: 1
# gaps in scaffolds: 74
Total gap length in scaffolds: 138686
Average gap length in scaffolds: 1874.14
Gap N50 in scaffolds: 20675
Gap auN in scaffolds: 21797.93
Gap L50 in scaffolds: 3
Largest gap in scaffolds: 35997
Smallest gap in scaffolds: 13
Base composition (A:C:G:T): 984620926:687490164:686059446:984916075
GC content %: 41.09
# soft-masked bases: 0
# segments: 178
Total segment length: 3343086611
Average segment length: 18781385.46
# gaps: 74
# paths: 104
Scaffold N10: 236160408
Scaffold N20: 219377424
Scaffold N30: 180681480
Scaffold N40: 141551058
Scaffold N50: 125437426
Scaffold N60: 109107485
Scaffold N70: 87052876
Scaffold N80: 82406000
Scaffold N90: 73275821
Scaffold N100: 1
Scaffold L10: 2
Scaffold L20: 3
Scaffold L30: 5
Scaffold L40: 7
Scaffold L50: 10
Scaffold L60: 13
Scaffold L70: 16
Scaffold L80: 20
Scaffold L90: 24
Scaffold L100: 104
Scaffold NG10: 236160408
Scaffold NG20: 219377424
Scaffold NG30: 180681480
Scaffold NG40: 164477691
Scaffold NG50: 134090202
Scaffold NG60: 117534258
Scaffold NG70: 96585471
Scaffold NG80: 86756607
Scaffold NG90: 82406000
Scaffold NG100: 73275821
Scaffold LG10: 2
Scaffold LG20: 3
Scaffold LG30: 5
Scaffold LG40: 6
Scaffold LG50: 8
Scaffold LG60: 11
Scaffold LG70: 14
Scaffold LG80: 17
Scaffold LG90: 20
Scaffold LG100: 24
Contig N10: 177989186
Contig N20: 141551058
Contig N30: 119595178
Contig N40: 88304850
Contig N50: 77716104
Contig N60: 64897926
Contig N70: 50766403
Contig N80: 38082545
Contig N90: 19324751
Contig N100: 1
Contig L10: 2
Contig L20: 4
Contig L30: 7
Contig L40: 10
Contig L50: 14
Contig L60: 19
Contig L70: 25
Contig L80: 32
Contig L90: 43
Contig L100: 178
Contig NG10: 177989186
Contig NG20: 141551058
Contig NG30: 120144288
Contig NG40: 89132339
Contig NG50: 82586413
Contig NG60: 73275821
Contig NG70: 63623994
Contig NG80: 49644639
Contig NG90: 36506007
Contig NG100: 19324751
Contig LG10: 2
Contig LG20: 4
Contig LG30: 6
Contig LG40: 9
Contig LG50: 12
Contig LG60: 16
Contig LG70: 21
Contig LG80: 26
Contig LG90: 33
Contig LG100: 43
Gap N10: 35997
Gap N20: 35997
Gap N30: 26979
Gap N40: 26979
Gap N50: 20675
Gap N60: 20675
Gap N70: 17285
Gap N80: 14311
Gap N90: 2591
Gap N100: 13
Gap L10: 1
Gap L20: 1
Gap L30: 2
Gap L40: 2
Gap L50: 3
Gap L60: 3
Gap L70: 4
Gap L80: 5
Gap L90: 7
Gap L100: 74