annotate test-data/ele.asm2_post_gfastats.txt @ 3:3dd6be0cd8dd draft default tip

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit 720787c4fb8885f5127ab6ada2813f8dd580921c

+++Assembly summary+++: 
Expected genome size: 3013249396
# scaffolds: 91
Total scaffold length: 3140900549
Average scaffold length: 34515390.65
Scaffold N50: 125802197
Scaffold auN: 135350345.03
Scaffold L50: 9
Scaffold NG50: 125802197
Scaffold auNG: 141084230.72
Scaffold LG50: 9
Largest scaffold: 242540316
Smallest scaffold: 1
# contigs: 153
Total contig length: 3140360856
Average contig length: 20525234.35
Contig N50: 88213608
Contig auN: 101703874.24
Contig L50: 11
Contig NG50: 88213608
Contig auNG: 105994168.95
Contig LG50: 11
Largest contig: 234471621
Smallest contig: 1
# gaps in scaffolds: 62
Total gap length in scaffolds: 539693
Average gap length in scaffolds: 8704.73
Gap N50 in scaffolds: 323721
Gap auN in scaffolds: 239707.53
Gap L50 in scaffolds: 1
Largest gap in scaffolds: 323721
Smallest gap in scaffolds: 13
Base composition (A:C:G:T): 925961494:647141117:642449847:924808398
GC content %: 41.07
# soft-masked bases: 0
# segments: 153
Total segment length: 3140360856
Average segment length: 20525234.35
# gaps: 62
# paths: 91
Scaffold N10: 234471621
Scaffold N20: 209675643
Scaffold N30: 168942159
Scaffold N40: 134135692
Scaffold N50: 125802197
Scaffold N60: 104898581
Scaffold N70: 85267550
Scaffold N80: 82719204
Scaffold N90: 78370265
Scaffold N100: 1
Scaffold L10: 2
Scaffold L20: 3
Scaffold L30: 5
Scaffold L40: 7
Scaffold L50: 9
Scaffold L60: 12
Scaffold L70: 16
Scaffold L80: 19
Scaffold L90: 23
Scaffold L100: 91
Scaffold NG10: 234471621
Scaffold NG20: 209675643
Scaffold NG30: 168942159
Scaffold NG40: 134135692
Scaffold NG50: 125802197
Scaffold NG60: 110010710
Scaffold NG70: 88213608
Scaffold NG80: 82835581
Scaffold NG90: 80300231
Scaffold NG100: 49409000
Scaffold LG10: 2
Scaffold LG20: 3
Scaffold LG30: 5
Scaffold LG40: 7
Scaffold LG50: 9
Scaffold LG60: 11
Scaffold LG70: 15
Scaffold LG80: 18
Scaffold LG90: 22
Scaffold LG100: 26
Contig N10: 204044015
Contig N20: 160573602
Contig N30: 122210704
Contig N40: 116290662
Contig N50: 88213608
Contig N60: 76459109
Contig N70: 52689000
Contig N80: 36940240
Contig N90: 33595625
Contig N100: 1
Contig L10: 2
Contig L20: 4
Contig L30: 6
Contig L40: 8
Contig L50: 11
Contig L60: 15
Contig L70: 20
Contig L80: 27
Contig L90: 36
Contig L100: 153
Contig NG10: 204044015
Contig NG20: 164853315
Contig NG30: 122210704
Contig NG40: 116290662
Contig NG50: 88213608
Contig NG60: 77872504
Contig NG70: 58969899
Contig NG80: 40048101
Contig NG90: 34729504
Contig NG100: 6573539
Contig LG10: 2
Contig LG20: 3
Contig LG30: 6
Contig LG40: 8
Contig LG50: 11
Contig LG60: 14
Contig LG70: 19
Contig LG80: 25
Contig LG90: 33
Contig LG100: 49
Gap N10: 323721
Gap N20: 323721
Gap N30: 323721
Gap N40: 323721
Gap N50: 323721
Gap N60: 152291
Gap N70: 152291
Gap N80: 152291
Gap N90: 34316
Gap N100: 13
Gap L10: 1
Gap L20: 1
Gap L30: 1
Gap L40: 1
Gap L50: 1
Gap L60: 2
Gap L70: 2
Gap L80: 2
Gap L90: 3
Gap L100: 62