annotate test-data/ele_pre.asm1_gfastats.txt @ 3:3dd6be0cd8dd draft default tip

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit 720787c4fb8885f5127ab6ada2813f8dd580921c

+++Assembly summary+++: 
Expected genome size: 3013249396
# scaffolds: 973
Total scaffold length: 3660021265
Average scaffold length: 3761584.03
Scaffold N50: 111683922
Scaffold auN: 121433811.93
Scaffold L50: 12
Scaffold NG50: 124780000
Scaffold auNG: 147498688.47
Scaffold LG50: 9
Largest scaffold: 243324329
Smallest scaffold: 11938
# contigs: 1101
Total contig length: 3658146742
Average contig length: 3322567.43
Contig N50: 73275821
Contig auN: 80985913.84
Contig L50: 16
Contig NG50: 82586413
Contig auNG: 98318565.08
Contig LG50: 12
Largest contig: 204998129
Smallest contig: 140
# gaps in scaffolds: 128
Total gap length in scaffolds: 1874523
Average gap length in scaffolds: 14644.71
Gap N50 in scaffolds: 1310475
Gap auN in scaffolds: 947429.23
Gap L50 in scaffolds: 1
Largest gap in scaffolds: 1310475
Smallest gap in scaffolds: 13
Base composition (A:C:G:T): 1064699494:760497093:762136425:1070813730
GC content %: 41.62
# soft-masked bases: 0
# segments: 1101
Total segment length: 3658146742
Average segment length: 3322567.43
# gaps: 128
# paths: 973
Scaffold N10: 236160408
Scaffold N20: 194728383
Scaffold N30: 141551058
Scaffold N40: 124780000
Scaffold N50: 111683922
Scaffold N60: 92969958
Scaffold N70: 82406000
Scaffold N80: 76754748
Scaffold N90: 6554085
Scaffold N100: 11938
Scaffold L10: 2
Scaffold L20: 4
Scaffold L30: 6
Scaffold L40: 9
Scaffold L50: 12
Scaffold L60: 15
Scaffold L70: 19
Scaffold L80: 24
Scaffold L90: 35
Scaffold L100: 973
Scaffold NG10: 236160408
Scaffold NG20: 209662331
Scaffold NG30: 164562945
Scaffold NG40: 134694077
Scaffold NG50: 124780000
Scaffold NG60: 117534258
Scaffold NG70: 97684049
Scaffold NG80: 84211173
Scaffold NG90: 80601974
Scaffold NG100: 69902989
Scaffold LG10: 2
Scaffold LG20: 3
Scaffold LG30: 5
Scaffold LG40: 7
Scaffold LG50: 9
Scaffold LG60: 11
Scaffold LG70: 14
Scaffold LG80: 18
Scaffold LG90: 21
Scaffold LG100: 25
Contig N10: 177989186
Contig N20: 134382063
Contig N30: 117534258
Contig N40: 82586413
Contig N50: 73275821
Contig N60: 54864116
Contig N70: 48431110
Contig N80: 26563858
Contig N90: 2992004
Contig N100: 140
Contig L10: 2
Contig L20: 5
Contig L30: 8
Contig L40: 12
Contig L50: 16
Contig L60: 22
Contig L70: 29
Contig L80: 39
Contig L90: 85
Contig L100: 1101
Contig NG10: 177989186
Contig NG20: 141551058
Contig NG30: 120144288
Contig NG40: 89132339
Contig NG50: 82586413
Contig NG60: 73275821
Contig NG70: 63623994
Contig NG80: 49644639
Contig NG90: 36506007
Contig NG100: 19324751
Contig LG10: 2
Contig LG20: 4
Contig LG30: 6
Contig LG40: 9
Contig LG50: 12
Contig LG60: 16
Contig LG70: 21
Contig LG80: 26
Contig LG90: 33
Contig LG100: 43
Gap N10: 1310475
Gap N20: 1310475
Gap N30: 1310475
Gap N40: 1310475
Gap N50: 1310475
Gap N60: 1310475
Gap N70: 185666
Gap N80: 121398
Gap N90: 72844
Gap N100: 13
Gap L10: 1
Gap L20: 1
Gap L30: 1
Gap L40: 1
Gap L50: 1
Gap L60: 1
Gap L70: 2
Gap L80: 3
Gap L90: 4
Gap L100: 128