annotate test-data/ele.asm2_post_gfastats.txt @ 0:8c99976de71e draft

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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date Fri, 07 Jun 2024 14:23:49 +0000
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8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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1 +++Assembly summary+++:
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2 Expected genome size: 3013249396
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3 # scaffolds: 91
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4 Total scaffold length: 3140900549
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5 Average scaffold length: 34515390.65
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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6 Scaffold N50: 125802197
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7 Scaffold auN: 135350345.03
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8 Scaffold L50: 9
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9 Scaffold NG50: 125802197
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10 Scaffold auNG: 141084230.72
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11 Scaffold LG50: 9
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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12 Largest scaffold: 242540316
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13 Smallest scaffold: 1
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14 # contigs: 153
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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15 Total contig length: 3140360856
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16 Average contig length: 20525234.35
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17 Contig N50: 88213608
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18 Contig auN: 101703874.24
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19 Contig L50: 11
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20 Contig NG50: 88213608
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21 Contig auNG: 105994168.95
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22 Contig LG50: 11
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23 Largest contig: 234471621
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24 Smallest contig: 1
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25 # gaps in scaffolds: 62
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26 Total gap length in scaffolds: 539693
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27 Average gap length in scaffolds: 8704.73
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28 Gap N50 in scaffolds: 323721
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29 Gap auN in scaffolds: 239707.53
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30 Gap L50 in scaffolds: 1
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31 Largest gap in scaffolds: 323721
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32 Smallest gap in scaffolds: 13
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33 Base composition (A:C:G:T): 925961494:647141117:642449847:924808398
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34 GC content %: 41.07
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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35 # soft-masked bases: 0
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36 # segments: 153
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37 Total segment length: 3140360856
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38 Average segment length: 20525234.35
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39 # gaps: 62
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40 # paths: 91
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41 Scaffold N10: 234471621
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42 Scaffold N20: 209675643
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43 Scaffold N30: 168942159
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44 Scaffold N40: 134135692
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45 Scaffold N50: 125802197
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46 Scaffold N60: 104898581
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47 Scaffold N70: 85267550
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48 Scaffold N80: 82719204
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49 Scaffold N90: 78370265
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50 Scaffold N100: 1
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51 Scaffold L10: 2
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52 Scaffold L20: 3
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53 Scaffold L30: 5
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54 Scaffold L40: 7
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55 Scaffold L50: 9
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56 Scaffold L60: 12
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57 Scaffold L70: 16
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58 Scaffold L80: 19
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59 Scaffold L90: 23
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60 Scaffold L100: 91
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61 Scaffold NG10: 234471621
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62 Scaffold NG20: 209675643
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63 Scaffold NG30: 168942159
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64 Scaffold NG40: 134135692
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65 Scaffold NG50: 125802197
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66 Scaffold NG60: 110010710
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67 Scaffold NG70: 88213608
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68 Scaffold NG80: 82835581
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69 Scaffold NG90: 80300231
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70 Scaffold NG100: 49409000
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71 Scaffold LG10: 2
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72 Scaffold LG20: 3
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73 Scaffold LG30: 5
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74 Scaffold LG40: 7
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75 Scaffold LG50: 9
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76 Scaffold LG60: 11
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77 Scaffold LG70: 15
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78 Scaffold LG80: 18
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79 Scaffold LG90: 22
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80 Scaffold LG100: 26
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81 Contig N10: 204044015
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82 Contig N20: 160573602
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83 Contig N30: 122210704
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84 Contig N40: 116290662
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85 Contig N50: 88213608
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86 Contig N60: 76459109
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87 Contig N70: 52689000
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88 Contig N80: 36940240
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89 Contig N90: 33595625
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90 Contig N100: 1
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91 Contig L10: 2
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92 Contig L20: 4
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93 Contig L30: 6
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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94 Contig L40: 8
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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95 Contig L50: 11
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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96 Contig L60: 15
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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97 Contig L70: 20
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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98 Contig L80: 27
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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99 Contig L90: 36
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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100 Contig L100: 153
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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101 Contig NG10: 204044015
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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102 Contig NG20: 164853315
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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103 Contig NG30: 122210704
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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104 Contig NG40: 116290662
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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105 Contig NG50: 88213608
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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106 Contig NG60: 77872504
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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107 Contig NG70: 58969899
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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108 Contig NG80: 40048101
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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109 Contig NG90: 34729504
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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110 Contig NG100: 6573539
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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111 Contig LG10: 2
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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112 Contig LG20: 3
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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113 Contig LG30: 6
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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114 Contig LG40: 8
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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115 Contig LG50: 11
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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116 Contig LG60: 14
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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117 Contig LG70: 19
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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118 Contig LG80: 25
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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119 Contig LG90: 33
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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120 Contig LG100: 49
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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121 Gap N10: 323721
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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122 Gap N20: 323721
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123 Gap N30: 323721
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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124 Gap N40: 323721
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125 Gap N50: 323721
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126 Gap N60: 152291
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127 Gap N70: 152291
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128 Gap N80: 152291
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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129 Gap N90: 34316
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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130 Gap N100: 13
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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131 Gap L10: 1
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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132 Gap L20: 1
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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133 Gap L30: 1
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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134 Gap L40: 1
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135 Gap L50: 1
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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136 Gap L60: 2
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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137 Gap L70: 2
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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138 Gap L80: 2
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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139 Gap L90: 3
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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140 Gap L100: 62