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annotate test-data/genomescope_results_summary.txt @ 0:8c99976de71e draft

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
author bgruening
date Fri, 07 Jun 2024 14:23:49 +0000
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8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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1 GenomeScope version 2.0
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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2 input file = /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/kmer_profiling/HiFi_trimmed.meryl/merylDB_10000.hist
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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3 output directory = /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/kmer_profiling/HiFi_trimmed.meryl/genomescope/
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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4 p = 2
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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5 k = 31
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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6 name prefix = results
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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7
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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8 property min max
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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9 Homozygous (aa) 99.739% 99.7476%
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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10 Heterozygous (ab) 0.252443% 0.260993%
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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11 Genome Haploid Length 3,011,504,214 bp 3,013,249,396 bp
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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12 Genome Repeat Length 551,610,389 bp 551,930,050 bp
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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13 Genome Unique Length 2,459,893,825 bp 2,461,319,346 bp
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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14 Model Fit 83.6025% 98.1859%
8c99976de71e planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
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15 Read Error Rate 0.16852% 0.16852%