Mercurial > repos > bgruening > erga_ear
comparison test-data/ele.asm2_post_gfastats.txt @ 0:8c99976de71e draft
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
author | bgruening |
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date | Fri, 07 Jun 2024 14:23:49 +0000 |
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-1:000000000000 | 0:8c99976de71e |
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1 +++Assembly summary+++: | |
2 Expected genome size: 3013249396 | |
3 # scaffolds: 91 | |
4 Total scaffold length: 3140900549 | |
5 Average scaffold length: 34515390.65 | |
6 Scaffold N50: 125802197 | |
7 Scaffold auN: 135350345.03 | |
8 Scaffold L50: 9 | |
9 Scaffold NG50: 125802197 | |
10 Scaffold auNG: 141084230.72 | |
11 Scaffold LG50: 9 | |
12 Largest scaffold: 242540316 | |
13 Smallest scaffold: 1 | |
14 # contigs: 153 | |
15 Total contig length: 3140360856 | |
16 Average contig length: 20525234.35 | |
17 Contig N50: 88213608 | |
18 Contig auN: 101703874.24 | |
19 Contig L50: 11 | |
20 Contig NG50: 88213608 | |
21 Contig auNG: 105994168.95 | |
22 Contig LG50: 11 | |
23 Largest contig: 234471621 | |
24 Smallest contig: 1 | |
25 # gaps in scaffolds: 62 | |
26 Total gap length in scaffolds: 539693 | |
27 Average gap length in scaffolds: 8704.73 | |
28 Gap N50 in scaffolds: 323721 | |
29 Gap auN in scaffolds: 239707.53 | |
30 Gap L50 in scaffolds: 1 | |
31 Largest gap in scaffolds: 323721 | |
32 Smallest gap in scaffolds: 13 | |
33 Base composition (A:C:G:T): 925961494:647141117:642449847:924808398 | |
34 GC content %: 41.07 | |
35 # soft-masked bases: 0 | |
36 # segments: 153 | |
37 Total segment length: 3140360856 | |
38 Average segment length: 20525234.35 | |
39 # gaps: 62 | |
40 # paths: 91 | |
41 Scaffold N10: 234471621 | |
42 Scaffold N20: 209675643 | |
43 Scaffold N30: 168942159 | |
44 Scaffold N40: 134135692 | |
45 Scaffold N50: 125802197 | |
46 Scaffold N60: 104898581 | |
47 Scaffold N70: 85267550 | |
48 Scaffold N80: 82719204 | |
49 Scaffold N90: 78370265 | |
50 Scaffold N100: 1 | |
51 Scaffold L10: 2 | |
52 Scaffold L20: 3 | |
53 Scaffold L30: 5 | |
54 Scaffold L40: 7 | |
55 Scaffold L50: 9 | |
56 Scaffold L60: 12 | |
57 Scaffold L70: 16 | |
58 Scaffold L80: 19 | |
59 Scaffold L90: 23 | |
60 Scaffold L100: 91 | |
61 Scaffold NG10: 234471621 | |
62 Scaffold NG20: 209675643 | |
63 Scaffold NG30: 168942159 | |
64 Scaffold NG40: 134135692 | |
65 Scaffold NG50: 125802197 | |
66 Scaffold NG60: 110010710 | |
67 Scaffold NG70: 88213608 | |
68 Scaffold NG80: 82835581 | |
69 Scaffold NG90: 80300231 | |
70 Scaffold NG100: 49409000 | |
71 Scaffold LG10: 2 | |
72 Scaffold LG20: 3 | |
73 Scaffold LG30: 5 | |
74 Scaffold LG40: 7 | |
75 Scaffold LG50: 9 | |
76 Scaffold LG60: 11 | |
77 Scaffold LG70: 15 | |
78 Scaffold LG80: 18 | |
79 Scaffold LG90: 22 | |
80 Scaffold LG100: 26 | |
81 Contig N10: 204044015 | |
82 Contig N20: 160573602 | |
83 Contig N30: 122210704 | |
84 Contig N40: 116290662 | |
85 Contig N50: 88213608 | |
86 Contig N60: 76459109 | |
87 Contig N70: 52689000 | |
88 Contig N80: 36940240 | |
89 Contig N90: 33595625 | |
90 Contig N100: 1 | |
91 Contig L10: 2 | |
92 Contig L20: 4 | |
93 Contig L30: 6 | |
94 Contig L40: 8 | |
95 Contig L50: 11 | |
96 Contig L60: 15 | |
97 Contig L70: 20 | |
98 Contig L80: 27 | |
99 Contig L90: 36 | |
100 Contig L100: 153 | |
101 Contig NG10: 204044015 | |
102 Contig NG20: 164853315 | |
103 Contig NG30: 122210704 | |
104 Contig NG40: 116290662 | |
105 Contig NG50: 88213608 | |
106 Contig NG60: 77872504 | |
107 Contig NG70: 58969899 | |
108 Contig NG80: 40048101 | |
109 Contig NG90: 34729504 | |
110 Contig NG100: 6573539 | |
111 Contig LG10: 2 | |
112 Contig LG20: 3 | |
113 Contig LG30: 6 | |
114 Contig LG40: 8 | |
115 Contig LG50: 11 | |
116 Contig LG60: 14 | |
117 Contig LG70: 19 | |
118 Contig LG80: 25 | |
119 Contig LG90: 33 | |
120 Contig LG100: 49 | |
121 Gap N10: 323721 | |
122 Gap N20: 323721 | |
123 Gap N30: 323721 | |
124 Gap N40: 323721 | |
125 Gap N50: 323721 | |
126 Gap N60: 152291 | |
127 Gap N70: 152291 | |
128 Gap N80: 152291 | |
129 Gap N90: 34316 | |
130 Gap N100: 13 | |
131 Gap L10: 1 | |
132 Gap L20: 1 | |
133 Gap L30: 1 | |
134 Gap L40: 1 | |
135 Gap L50: 1 | |
136 Gap L60: 2 | |
137 Gap L70: 2 | |
138 Gap L80: 2 | |
139 Gap L90: 3 | |
140 Gap L100: 62 |