comparison test-data/ele.asm2_post_gfastats.txt @ 0:8c99976de71e draft

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
author bgruening
date Fri, 07 Jun 2024 14:23:49 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:8c99976de71e
1 +++Assembly summary+++:
2 Expected genome size: 3013249396
3 # scaffolds: 91
4 Total scaffold length: 3140900549
5 Average scaffold length: 34515390.65
6 Scaffold N50: 125802197
7 Scaffold auN: 135350345.03
8 Scaffold L50: 9
9 Scaffold NG50: 125802197
10 Scaffold auNG: 141084230.72
11 Scaffold LG50: 9
12 Largest scaffold: 242540316
13 Smallest scaffold: 1
14 # contigs: 153
15 Total contig length: 3140360856
16 Average contig length: 20525234.35
17 Contig N50: 88213608
18 Contig auN: 101703874.24
19 Contig L50: 11
20 Contig NG50: 88213608
21 Contig auNG: 105994168.95
22 Contig LG50: 11
23 Largest contig: 234471621
24 Smallest contig: 1
25 # gaps in scaffolds: 62
26 Total gap length in scaffolds: 539693
27 Average gap length in scaffolds: 8704.73
28 Gap N50 in scaffolds: 323721
29 Gap auN in scaffolds: 239707.53
30 Gap L50 in scaffolds: 1
31 Largest gap in scaffolds: 323721
32 Smallest gap in scaffolds: 13
33 Base composition (A:C:G:T): 925961494:647141117:642449847:924808398
34 GC content %: 41.07
35 # soft-masked bases: 0
36 # segments: 153
37 Total segment length: 3140360856
38 Average segment length: 20525234.35
39 # gaps: 62
40 # paths: 91
41 Scaffold N10: 234471621
42 Scaffold N20: 209675643
43 Scaffold N30: 168942159
44 Scaffold N40: 134135692
45 Scaffold N50: 125802197
46 Scaffold N60: 104898581
47 Scaffold N70: 85267550
48 Scaffold N80: 82719204
49 Scaffold N90: 78370265
50 Scaffold N100: 1
51 Scaffold L10: 2
52 Scaffold L20: 3
53 Scaffold L30: 5
54 Scaffold L40: 7
55 Scaffold L50: 9
56 Scaffold L60: 12
57 Scaffold L70: 16
58 Scaffold L80: 19
59 Scaffold L90: 23
60 Scaffold L100: 91
61 Scaffold NG10: 234471621
62 Scaffold NG20: 209675643
63 Scaffold NG30: 168942159
64 Scaffold NG40: 134135692
65 Scaffold NG50: 125802197
66 Scaffold NG60: 110010710
67 Scaffold NG70: 88213608
68 Scaffold NG80: 82835581
69 Scaffold NG90: 80300231
70 Scaffold NG100: 49409000
71 Scaffold LG10: 2
72 Scaffold LG20: 3
73 Scaffold LG30: 5
74 Scaffold LG40: 7
75 Scaffold LG50: 9
76 Scaffold LG60: 11
77 Scaffold LG70: 15
78 Scaffold LG80: 18
79 Scaffold LG90: 22
80 Scaffold LG100: 26
81 Contig N10: 204044015
82 Contig N20: 160573602
83 Contig N30: 122210704
84 Contig N40: 116290662
85 Contig N50: 88213608
86 Contig N60: 76459109
87 Contig N70: 52689000
88 Contig N80: 36940240
89 Contig N90: 33595625
90 Contig N100: 1
91 Contig L10: 2
92 Contig L20: 4
93 Contig L30: 6
94 Contig L40: 8
95 Contig L50: 11
96 Contig L60: 15
97 Contig L70: 20
98 Contig L80: 27
99 Contig L90: 36
100 Contig L100: 153
101 Contig NG10: 204044015
102 Contig NG20: 164853315
103 Contig NG30: 122210704
104 Contig NG40: 116290662
105 Contig NG50: 88213608
106 Contig NG60: 77872504
107 Contig NG70: 58969899
108 Contig NG80: 40048101
109 Contig NG90: 34729504
110 Contig NG100: 6573539
111 Contig LG10: 2
112 Contig LG20: 3
113 Contig LG30: 6
114 Contig LG40: 8
115 Contig LG50: 11
116 Contig LG60: 14
117 Contig LG70: 19
118 Contig LG80: 25
119 Contig LG90: 33
120 Contig LG100: 49
121 Gap N10: 323721
122 Gap N20: 323721
123 Gap N30: 323721
124 Gap N40: 323721
125 Gap N50: 323721
126 Gap N60: 152291
127 Gap N70: 152291
128 Gap N80: 152291
129 Gap N90: 34316
130 Gap N100: 13
131 Gap L10: 1
132 Gap L20: 1
133 Gap L30: 1
134 Gap L40: 1
135 Gap L50: 1
136 Gap L60: 2
137 Gap L70: 2
138 Gap L80: 2
139 Gap L90: 3
140 Gap L100: 62