Mercurial > repos > bgruening > erga_ear

comparison test-data/ele_pre.asm1_gfastats.txt @ 0:8c99976de71e draft

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
author bgruening
date Fri, 07 Jun 2024 14:23:49 +0000
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-1:000000000000 0:8c99976de71e
1 +++Assembly summary+++:
2 Expected genome size: 3013249396
3 # scaffolds: 973
4 Total scaffold length: 3660021265
5 Average scaffold length: 3761584.03
6 Scaffold N50: 111683922
7 Scaffold auN: 121433811.93
8 Scaffold L50: 12
9 Scaffold NG50: 124780000
10 Scaffold auNG: 147498688.47
11 Scaffold LG50: 9
12 Largest scaffold: 243324329
13 Smallest scaffold: 11938
14 # contigs: 1101
15 Total contig length: 3658146742
16 Average contig length: 3322567.43
17 Contig N50: 73275821
18 Contig auN: 80985913.84
19 Contig L50: 16
20 Contig NG50: 82586413
21 Contig auNG: 98318565.08
22 Contig LG50: 12
23 Largest contig: 204998129
24 Smallest contig: 140
25 # gaps in scaffolds: 128
26 Total gap length in scaffolds: 1874523
27 Average gap length in scaffolds: 14644.71
28 Gap N50 in scaffolds: 1310475
29 Gap auN in scaffolds: 947429.23
30 Gap L50 in scaffolds: 1
31 Largest gap in scaffolds: 1310475
32 Smallest gap in scaffolds: 13
33 Base composition (A:C:G:T): 1064699494:760497093:762136425:1070813730
34 GC content %: 41.62
35 # soft-masked bases: 0
36 # segments: 1101
37 Total segment length: 3658146742
38 Average segment length: 3322567.43
39 # gaps: 128
40 # paths: 973
41 Scaffold N10: 236160408
42 Scaffold N20: 194728383
43 Scaffold N30: 141551058
44 Scaffold N40: 124780000
45 Scaffold N50: 111683922
46 Scaffold N60: 92969958
47 Scaffold N70: 82406000
48 Scaffold N80: 76754748
49 Scaffold N90: 6554085
50 Scaffold N100: 11938
51 Scaffold L10: 2
52 Scaffold L20: 4
53 Scaffold L30: 6
54 Scaffold L40: 9
55 Scaffold L50: 12
56 Scaffold L60: 15
57 Scaffold L70: 19
58 Scaffold L80: 24
59 Scaffold L90: 35
60 Scaffold L100: 973
61 Scaffold NG10: 236160408
62 Scaffold NG20: 209662331
63 Scaffold NG30: 164562945
64 Scaffold NG40: 134694077
65 Scaffold NG50: 124780000
66 Scaffold NG60: 117534258
67 Scaffold NG70: 97684049
68 Scaffold NG80: 84211173
69 Scaffold NG90: 80601974
70 Scaffold NG100: 69902989
71 Scaffold LG10: 2
72 Scaffold LG20: 3
73 Scaffold LG30: 5
74 Scaffold LG40: 7
75 Scaffold LG50: 9
76 Scaffold LG60: 11
77 Scaffold LG70: 14
78 Scaffold LG80: 18
79 Scaffold LG90: 21
80 Scaffold LG100: 25
81 Contig N10: 177989186
82 Contig N20: 134382063
83 Contig N30: 117534258
84 Contig N40: 82586413
85 Contig N50: 73275821
86 Contig N60: 54864116
87 Contig N70: 48431110
88 Contig N80: 26563858
89 Contig N90: 2992004
90 Contig N100: 140
91 Contig L10: 2
92 Contig L20: 5
93 Contig L30: 8
94 Contig L40: 12
95 Contig L50: 16
96 Contig L60: 22
97 Contig L70: 29
98 Contig L80: 39
99 Contig L90: 85
100 Contig L100: 1101
101 Contig NG10: 177989186
102 Contig NG20: 141551058
103 Contig NG30: 120144288
104 Contig NG40: 89132339
105 Contig NG50: 82586413
106 Contig NG60: 73275821
107 Contig NG70: 63623994
108 Contig NG80: 49644639
109 Contig NG90: 36506007
110 Contig NG100: 19324751
111 Contig LG10: 2
112 Contig LG20: 4
113 Contig LG30: 6
114 Contig LG40: 9
115 Contig LG50: 12
116 Contig LG60: 16
117 Contig LG70: 21
118 Contig LG80: 26
119 Contig LG90: 33
120 Contig LG100: 43
121 Gap N10: 1310475
122 Gap N20: 1310475
123 Gap N30: 1310475
124 Gap N40: 1310475
125 Gap N50: 1310475
126 Gap N60: 1310475
127 Gap N70: 185666
128 Gap N80: 121398
129 Gap N90: 72844
130 Gap N100: 13
131 Gap L10: 1
132 Gap L20: 1
133 Gap L30: 1
134 Gap L40: 1
135 Gap L50: 1
136 Gap L60: 1
137 Gap L70: 2
138 Gap L80: 3
139 Gap L90: 4
140 Gap L100: 128