Mercurial > repos > bgruening > erga_ear
comparison test-data/short_summary.specific.mammalia_odb10.pre.asm2.txt @ 0:8c99976de71e draft
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
| author | bgruening |
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| date | Fri, 07 Jun 2024 14:23:49 +0000 |
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| -1:000000000000 | 0:8c99976de71e |
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| 1 # BUSCO version is: 5.4.7 | |
| 2 # The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226) | |
| 3 # Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm2.fasta | |
| 4 # BUSCO was run in mode: euk_genome_met | |
| 5 # Gene predictor used: metaeuk | |
| 6 | |
| 7 ***** Results: ***** | |
| 8 | |
| 9 C:93.7%[S:92.9%,D:0.8%],F:1.1%,M:5.2%,n:9226 | |
| 10 8641 Complete BUSCOs (C) | |
| 11 8570 Complete and single-copy BUSCOs (S) | |
| 12 71 Complete and duplicated BUSCOs (D) | |
| 13 105 Fragmented BUSCOs (F) | |
| 14 480 Missing BUSCOs (M) | |
| 15 9226 Total BUSCO groups searched | |
| 16 | |
| 17 Assembly Statistics: | |
| 18 555 Number of scaffolds | |
| 19 632 Number of contigs | |
| 20 3238925270 Total length | |
| 21 0.108% Percent gaps | |
| 22 116 MB Scaffold N50 | |
| 23 88 MB Contigs N50 | |
| 24 | |
| 25 | |
| 26 Dependencies and versions: | |
| 27 hmmsearch: 3.1 | |
| 28 bbtools: 39.01 | |
| 29 metaeuk: 6.a5d39d9 | |
| 30 busco: 5.4.7 |