diff test-data/ele.asm2_post_gfastats.txt @ 0:8c99976de71e draft

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ele.asm2_post_gfastats.txt	Fri Jun 07 14:23:49 2024 +0000
@@ -0,0 +1,140 @@
++++Assembly summary+++: 
+Expected genome size: 3013249396
+# scaffolds: 91
+Total scaffold length: 3140900549
+Average scaffold length: 34515390.65
+Scaffold N50: 125802197
+Scaffold auN: 135350345.03
+Scaffold L50: 9
+Scaffold NG50: 125802197
+Scaffold auNG: 141084230.72
+Scaffold LG50: 9
+Largest scaffold: 242540316
+Smallest scaffold: 1
+# contigs: 153
+Total contig length: 3140360856
+Average contig length: 20525234.35
+Contig N50: 88213608
+Contig auN: 101703874.24
+Contig L50: 11
+Contig NG50: 88213608
+Contig auNG: 105994168.95
+Contig LG50: 11
+Largest contig: 234471621
+Smallest contig: 1
+# gaps in scaffolds: 62
+Total gap length in scaffolds: 539693
+Average gap length in scaffolds: 8704.73
+Gap N50 in scaffolds: 323721
+Gap auN in scaffolds: 239707.53
+Gap L50 in scaffolds: 1
+Largest gap in scaffolds: 323721
+Smallest gap in scaffolds: 13
+Base composition (A:C:G:T): 925961494:647141117:642449847:924808398
+GC content %: 41.07
+# soft-masked bases: 0
+# segments: 153
+Total segment length: 3140360856
+Average segment length: 20525234.35
+# gaps: 62
+# paths: 91
+Scaffold N10: 234471621
+Scaffold N20: 209675643
+Scaffold N30: 168942159
+Scaffold N40: 134135692
+Scaffold N50: 125802197
+Scaffold N60: 104898581
+Scaffold N70: 85267550
+Scaffold N80: 82719204
+Scaffold N90: 78370265
+Scaffold N100: 1
+Scaffold L10: 2
+Scaffold L20: 3
+Scaffold L30: 5
+Scaffold L40: 7
+Scaffold L50: 9
+Scaffold L60: 12
+Scaffold L70: 16
+Scaffold L80: 19
+Scaffold L90: 23
+Scaffold L100: 91
+Scaffold NG10: 234471621
+Scaffold NG20: 209675643
+Scaffold NG30: 168942159
+Scaffold NG40: 134135692
+Scaffold NG50: 125802197
+Scaffold NG60: 110010710
+Scaffold NG70: 88213608
+Scaffold NG80: 82835581
+Scaffold NG90: 80300231
+Scaffold NG100: 49409000
+Scaffold LG10: 2
+Scaffold LG20: 3
+Scaffold LG30: 5
+Scaffold LG40: 7
+Scaffold LG50: 9
+Scaffold LG60: 11
+Scaffold LG70: 15
+Scaffold LG80: 18
+Scaffold LG90: 22
+Scaffold LG100: 26
+Contig N10: 204044015
+Contig N20: 160573602
+Contig N30: 122210704
+Contig N40: 116290662
+Contig N50: 88213608
+Contig N60: 76459109
+Contig N70: 52689000
+Contig N80: 36940240
+Contig N90: 33595625
+Contig N100: 1
+Contig L10: 2
+Contig L20: 4
+Contig L30: 6
+Contig L40: 8
+Contig L50: 11
+Contig L60: 15
+Contig L70: 20
+Contig L80: 27
+Contig L90: 36
+Contig L100: 153
+Contig NG10: 204044015
+Contig NG20: 164853315
+Contig NG30: 122210704
+Contig NG40: 116290662
+Contig NG50: 88213608
+Contig NG60: 77872504
+Contig NG70: 58969899
+Contig NG80: 40048101
+Contig NG90: 34729504
+Contig NG100: 6573539
+Contig LG10: 2
+Contig LG20: 3
+Contig LG30: 6
+Contig LG40: 8
+Contig LG50: 11
+Contig LG60: 14
+Contig LG70: 19
+Contig LG80: 25
+Contig LG90: 33
+Contig LG100: 49
+Gap N10: 323721
+Gap N20: 323721
+Gap N30: 323721
+Gap N40: 323721
+Gap N50: 323721
+Gap N60: 152291
+Gap N70: 152291
+Gap N80: 152291
+Gap N90: 34316
+Gap N100: 13
+Gap L10: 1
+Gap L20: 1
+Gap L30: 1
+Gap L40: 1
+Gap L50: 1
+Gap L60: 2
+Gap L70: 2
+Gap L80: 2
+Gap L90: 3
+Gap L100: 62