Mercurial > repos > bgruening > erga_ear
diff test-data/ele_pre.asm2_gfastats.txt @ 0:8c99976de71e draft
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d
author | bgruening |
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date | Fri, 07 Jun 2024 14:23:49 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/ele_pre.asm2_gfastats.txt Fri Jun 07 14:23:49 2024 +0000 @@ -0,0 +1,140 @@ ++++Assembly summary+++: +Expected genome size: 3013249396 +# scaffolds: 555 +Total scaffold length: 3238925270 +Average scaffold length: 5835901.39 +Scaffold N50: 116290662 +Scaffold auN: 129007713.10 +Scaffold L50: 10 +Scaffold NG50: 125802197 +Scaffold auNG: 138669684.14 +Scaffold LG50: 9 +Largest scaffold: 240286497 +Smallest scaffold: 5000 +# contigs: 632 +Total contig length: 3235415746 +Average contig length: 5119328.71 +Contig N50: 88190939 +Contig auN: 98728369.04 +Contig L50: 12 +Contig NG50: 88213608 +Contig auNG: 106007594.40 +Contig LG50: 11 +Largest contig: 234471621 +Smallest contig: 1506 +# gaps in scaffolds: 77 +Total gap length in scaffolds: 3509524 +Average gap length in scaffolds: 45578.23 +Gap N50 in scaffolds: 1893595 +Gap auN in scaffolds: 1109381.96 +Gap L50 in scaffolds: 1 +Largest gap in scaffolds: 1893595 +Smallest gap in scaffolds: 13 +Base composition (A:C:G:T): 950023619:669435937:665265498:950690692 +GC content %: 41.25 +# soft-masked bases: 0 +# segments: 632 +Total segment length: 3235415746 +Average segment length: 5119328.71 +# gaps: 77 +# paths: 555 +Scaffold N10: 234471621 +Scaffold N20: 209119963 +Scaffold N30: 164853315 +Scaffold N40: 134179787 +Scaffold N50: 116290662 +Scaffold N60: 93312721 +Scaffold N70: 84883371 +Scaffold N80: 80300231 +Scaffold N90: 65267526 +Scaffold N100: 5000 +Scaffold L10: 2 +Scaffold L20: 3 +Scaffold L30: 5 +Scaffold L40: 7 +Scaffold L50: 10 +Scaffold L60: 13 +Scaffold L70: 17 +Scaffold L80: 21 +Scaffold L90: 25 +Scaffold L100: 555 +Scaffold NG10: 234471621 +Scaffold NG20: 209119963 +Scaffold NG30: 164853315 +Scaffold NG40: 134179787 +Scaffold NG50: 125802197 +Scaffold NG60: 96796698 +Scaffold NG70: 85267550 +Scaffold NG80: 82835581 +Scaffold NG90: 79589986 +Scaffold NG100: 37243292 +Scaffold LG10: 2 +Scaffold LG20: 3 +Scaffold LG30: 5 +Scaffold LG40: 7 +Scaffold LG50: 9 +Scaffold LG60: 12 +Scaffold LG70: 15 +Scaffold LG80: 18 +Scaffold LG90: 22 +Scaffold LG100: 27 +Contig N10: 204044015 +Contig N20: 160573602 +Contig N30: 122210704 +Contig N40: 116110962 +Contig N50: 88190939 +Contig N60: 72901558 +Contig N70: 47659775 +Contig N80: 35818318 +Contig N90: 20408791 +Contig N100: 1506 +Contig L10: 2 +Contig L20: 4 +Contig L30: 6 +Contig L40: 9 +Contig L50: 12 +Contig L60: 16 +Contig L70: 21 +Contig L80: 30 +Contig L90: 40 +Contig L100: 632 +Contig NG10: 204044015 +Contig NG20: 164853315 +Contig NG30: 122210704 +Contig NG40: 116290662 +Contig NG50: 88213608 +Contig NG60: 77872504 +Contig NG70: 58969899 +Contig NG80: 40048101 +Contig NG90: 34729504 +Contig NG100: 6573539 +Contig LG10: 2 +Contig LG20: 3 +Contig LG30: 6 +Contig LG40: 8 +Contig LG50: 11 +Contig LG60: 14 +Contig LG70: 19 +Contig LG80: 25 +Contig LG90: 33 +Contig LG100: 49 +Gap N10: 1893595 +Gap N20: 1893595 +Gap N30: 1893595 +Gap N40: 1893595 +Gap N50: 1893595 +Gap N60: 323721 +Gap N70: 312502 +Gap N80: 146315 +Gap N90: 99478 +Gap N100: 13 +Gap L10: 1 +Gap L20: 1 +Gap L30: 1 +Gap L40: 1 +Gap L50: 1 +Gap L60: 2 +Gap L70: 3 +Gap L80: 5 +Gap L90: 8 +Gap L100: 77