Mercurial > repos > bgruening > erga_ear
view test-data/ele.asm2_post_gfastats.txt @ 2:a34826ae0a73 draft default tip
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e293d14e82a903a4cab64dd72dfa3f3798466176
author | bgruening |
---|---|
date | Fri, 30 Aug 2024 09:27:31 +0000 |
parents | 8c99976de71e |
children |
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+++Assembly summary+++: Expected genome size: 3013249396 # scaffolds: 91 Total scaffold length: 3140900549 Average scaffold length: 34515390.65 Scaffold N50: 125802197 Scaffold auN: 135350345.03 Scaffold L50: 9 Scaffold NG50: 125802197 Scaffold auNG: 141084230.72 Scaffold LG50: 9 Largest scaffold: 242540316 Smallest scaffold: 1 # contigs: 153 Total contig length: 3140360856 Average contig length: 20525234.35 Contig N50: 88213608 Contig auN: 101703874.24 Contig L50: 11 Contig NG50: 88213608 Contig auNG: 105994168.95 Contig LG50: 11 Largest contig: 234471621 Smallest contig: 1 # gaps in scaffolds: 62 Total gap length in scaffolds: 539693 Average gap length in scaffolds: 8704.73 Gap N50 in scaffolds: 323721 Gap auN in scaffolds: 239707.53 Gap L50 in scaffolds: 1 Largest gap in scaffolds: 323721 Smallest gap in scaffolds: 13 Base composition (A:C:G:T): 925961494:647141117:642449847:924808398 GC content %: 41.07 # soft-masked bases: 0 # segments: 153 Total segment length: 3140360856 Average segment length: 20525234.35 # gaps: 62 # paths: 91 Scaffold N10: 234471621 Scaffold N20: 209675643 Scaffold N30: 168942159 Scaffold N40: 134135692 Scaffold N50: 125802197 Scaffold N60: 104898581 Scaffold N70: 85267550 Scaffold N80: 82719204 Scaffold N90: 78370265 Scaffold N100: 1 Scaffold L10: 2 Scaffold L20: 3 Scaffold L30: 5 Scaffold L40: 7 Scaffold L50: 9 Scaffold L60: 12 Scaffold L70: 16 Scaffold L80: 19 Scaffold L90: 23 Scaffold L100: 91 Scaffold NG10: 234471621 Scaffold NG20: 209675643 Scaffold NG30: 168942159 Scaffold NG40: 134135692 Scaffold NG50: 125802197 Scaffold NG60: 110010710 Scaffold NG70: 88213608 Scaffold NG80: 82835581 Scaffold NG90: 80300231 Scaffold NG100: 49409000 Scaffold LG10: 2 Scaffold LG20: 3 Scaffold LG30: 5 Scaffold LG40: 7 Scaffold LG50: 9 Scaffold LG60: 11 Scaffold LG70: 15 Scaffold LG80: 18 Scaffold LG90: 22 Scaffold LG100: 26 Contig N10: 204044015 Contig N20: 160573602 Contig N30: 122210704 Contig N40: 116290662 Contig N50: 88213608 Contig N60: 76459109 Contig N70: 52689000 Contig N80: 36940240 Contig N90: 33595625 Contig N100: 1 Contig L10: 2 Contig L20: 4 Contig L30: 6 Contig L40: 8 Contig L50: 11 Contig L60: 15 Contig L70: 20 Contig L80: 27 Contig L90: 36 Contig L100: 153 Contig NG10: 204044015 Contig NG20: 164853315 Contig NG30: 122210704 Contig NG40: 116290662 Contig NG50: 88213608 Contig NG60: 77872504 Contig NG70: 58969899 Contig NG80: 40048101 Contig NG90: 34729504 Contig NG100: 6573539 Contig LG10: 2 Contig LG20: 3 Contig LG30: 6 Contig LG40: 8 Contig LG50: 11 Contig LG60: 14 Contig LG70: 19 Contig LG80: 25 Contig LG90: 33 Contig LG100: 49 Gap N10: 323721 Gap N20: 323721 Gap N30: 323721 Gap N40: 323721 Gap N50: 323721 Gap N60: 152291 Gap N70: 152291 Gap N80: 152291 Gap N90: 34316 Gap N100: 13 Gap L10: 1 Gap L20: 1 Gap L30: 1 Gap L40: 1 Gap L50: 1 Gap L60: 2 Gap L70: 2 Gap L80: 2 Gap L90: 3 Gap L100: 62