Mercurial > repos > bgruening > erga_ear

view test-data/short_summary.specific.mammalia_odb10.post.asm1.txt @ 2:a34826ae0a73 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e293d14e82a903a4cab64dd72dfa3f3798466176
author bgruening
date Fri, 30 Aug 2024 09:27:31 +0000
parents 8c99976de71e
children
line wrap: on
line source

# BUSCO version is: 5.4.7 
# The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226)
# Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_post/ASSEMBLY_FASTAS/ele_post.asm1.fasta
# BUSCO was run in mode: euk_genome_met
# Gene predictor used: metaeuk

	***** Results: *****

	C:95.9%[S:95.2%,D:0.7%],F:1.1%,M:3.0%,n:9226	   
	8855	Complete BUSCOs (C)			   
	8787	Complete and single-copy BUSCOs (S)	   
	68	Complete and duplicated BUSCOs (D)	   
	100	Fragmented BUSCOs (F)			   
	271	Missing BUSCOs (M)			   
	9226	Total BUSCO groups searched		   

Assembly Statistics:
	104	Number of scaffolds
	178	Number of contigs
	3343225297	Total length
	0.004%	Percent gaps
	125 MB	Scaffold N50
	77 MB	Contigs N50


Dependencies and versions:
	hmmsearch: 3.1
	bbtools: 39.01
	metaeuk: 6.a5d39d9
	busco: 5.4.7