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view test-data/short_summary.specific.mammalia_odb10.pre.asm1.txt @ 2:a34826ae0a73 draft

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planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e293d14e82a903a4cab64dd72dfa3f3798466176
author bgruening
date Fri, 30 Aug 2024 09:27:31 +0000
parents 8c99976de71e
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# BUSCO version is: 5.4.7 
# The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226)
# Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm1.fasta
# BUSCO was run in mode: euk_genome_met
# Gene predictor used: metaeuk

	***** Results: *****

	C:96.0%[S:95.3%,D:0.7%],F:1.1%,M:2.9%,n:9226	   
	8855	Complete BUSCOs (C)			   
	8788	Complete and single-copy BUSCOs (S)	   
	67	Complete and duplicated BUSCOs (D)	   
	101	Fragmented BUSCOs (F)			   
	270	Missing BUSCOs (M)			   
	9226	Total BUSCO groups searched		   

Assembly Statistics:
	973	Number of scaffolds
	1101	Number of contigs
	3660021265	Total length
	0.051%	Percent gaps
	111 MB	Scaffold N50
	73 MB	Contigs N50


Dependencies and versions:
	hmmsearch: 3.1
	bbtools: 39.01
	metaeuk: 6.a5d39d9
	busco: 5.4.7