Mercurial > repos > bgruening > erga_ear
view test-data/short_summary.specific.mammalia_odb10.pre.asm2.txt @ 2:a34826ae0a73 draft default tip
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e293d14e82a903a4cab64dd72dfa3f3798466176
author | bgruening |
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date | Fri, 30 Aug 2024 09:27:31 +0000 |
parents | 8c99976de71e |
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# BUSCO version is: 5.4.7 # The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226) # Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm2.fasta # BUSCO was run in mode: euk_genome_met # Gene predictor used: metaeuk ***** Results: ***** C:93.7%[S:92.9%,D:0.8%],F:1.1%,M:5.2%,n:9226 8641 Complete BUSCOs (C) 8570 Complete and single-copy BUSCOs (S) 71 Complete and duplicated BUSCOs (D) 105 Fragmented BUSCOs (F) 480 Missing BUSCOs (M) 9226 Total BUSCO groups searched Assembly Statistics: 555 Number of scaffolds 632 Number of contigs 3238925270 Total length 0.108% Percent gaps 116 MB Scaffold N50 88 MB Contigs N50 Dependencies and versions: hmmsearch: 3.1 bbtools: 39.01 metaeuk: 6.a5d39d9 busco: 5.4.7